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A Theoretical Study of Organotin Binding in Aromatase
The widely used organotin compounds are notorious for their acute toxicity. Experiments revealed that organotin might cause reproductive toxicity by reversibly inhibiting animal aromatase functioning. However, the inhibition mechanism is obscure, especially at the molecular level. Compared to experi...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10218834/ https://www.ncbi.nlm.nih.gov/pubmed/37240300 http://dx.doi.org/10.3390/ijms24108954 |
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author | Cheng, Shuming Yang, Jing |
author_facet | Cheng, Shuming Yang, Jing |
author_sort | Cheng, Shuming |
collection | PubMed |
description | The widely used organotin compounds are notorious for their acute toxicity. Experiments revealed that organotin might cause reproductive toxicity by reversibly inhibiting animal aromatase functioning. However, the inhibition mechanism is obscure, especially at the molecular level. Compared to experimental methods, theoretical approaches via computational simulations can help to gain a microscopic view of the mechanism. Here, in an initial attempt to uncover the mechanism, we combined molecular docking and classical molecular dynamics to investigate the binding between organotins and aromatase. The energetics analysis indicated that the van der Waals interaction is the primary driving force of binding the organic tail of organotin and the aromatase center. The hydrogen bond linkage trajectory analysis revealed that water plays a significant role in linking the ligand–water–protein triangle network. As an initial step in studying the mechanism of organotin inhibiting aromatase, this work provides an in-depth understanding of the binding mechanism of organotin. Further, our study will help to develop effective and environmentally friendly methods to treat animals that have already been contaminated by organotin, as well as sustainable solutions for organotin degradation. |
format | Online Article Text |
id | pubmed-10218834 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-102188342023-05-27 A Theoretical Study of Organotin Binding in Aromatase Cheng, Shuming Yang, Jing Int J Mol Sci Article The widely used organotin compounds are notorious for their acute toxicity. Experiments revealed that organotin might cause reproductive toxicity by reversibly inhibiting animal aromatase functioning. However, the inhibition mechanism is obscure, especially at the molecular level. Compared to experimental methods, theoretical approaches via computational simulations can help to gain a microscopic view of the mechanism. Here, in an initial attempt to uncover the mechanism, we combined molecular docking and classical molecular dynamics to investigate the binding between organotins and aromatase. The energetics analysis indicated that the van der Waals interaction is the primary driving force of binding the organic tail of organotin and the aromatase center. The hydrogen bond linkage trajectory analysis revealed that water plays a significant role in linking the ligand–water–protein triangle network. As an initial step in studying the mechanism of organotin inhibiting aromatase, this work provides an in-depth understanding of the binding mechanism of organotin. Further, our study will help to develop effective and environmentally friendly methods to treat animals that have already been contaminated by organotin, as well as sustainable solutions for organotin degradation. MDPI 2023-05-18 /pmc/articles/PMC10218834/ /pubmed/37240300 http://dx.doi.org/10.3390/ijms24108954 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Cheng, Shuming Yang, Jing A Theoretical Study of Organotin Binding in Aromatase |
title | A Theoretical Study of Organotin Binding in Aromatase |
title_full | A Theoretical Study of Organotin Binding in Aromatase |
title_fullStr | A Theoretical Study of Organotin Binding in Aromatase |
title_full_unstemmed | A Theoretical Study of Organotin Binding in Aromatase |
title_short | A Theoretical Study of Organotin Binding in Aromatase |
title_sort | theoretical study of organotin binding in aromatase |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10218834/ https://www.ncbi.nlm.nih.gov/pubmed/37240300 http://dx.doi.org/10.3390/ijms24108954 |
work_keys_str_mv | AT chengshuming atheoreticalstudyoforganotinbindinginaromatase AT yangjing atheoreticalstudyoforganotinbindinginaromatase AT chengshuming theoreticalstudyoforganotinbindinginaromatase AT yangjing theoreticalstudyoforganotinbindinginaromatase |