Pygenomics: manipulating genomic intervals and data files in Python

SUMMARY: We present pygenomics, a Python package for working with genomic intervals and bioinformatic data files. The package implements interval operations, provides both API and CLI, and supports reading and writing data in widely used bioinformatic formats, including BAM, BED, GFF3, and VCF. The...

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Detalles Bibliográficos
Autores principales: Tamazian, Gaik, Cherkasov, Nikolay, Kanapin, Alexander, Samsonova, Anastasia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10246576/
https://www.ncbi.nlm.nih.gov/pubmed/37228014
http://dx.doi.org/10.1093/bioinformatics/btad346

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10246576/
https://www.ncbi.nlm.nih.gov/pubmed/37228014
http://dx.doi.org/10.1093/bioinformatics/btad346

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