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Ultrafast Fragment Screening Using Photo-Hyperpolarized (CIDNP) NMR

[Image: see text] While nuclear magnetic resonance (NMR) is regarded as a reference in fragment-based drug design, its implementation in a high-throughput manner is limited by its lack of sensitivity resulting in long acquisition times and high micromolar sample concentrations. Several hyperpolariza...

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Autores principales: Torres, Felix, Bütikofer, Matthias, Stadler, Gabriela R., Renn, Alois, Kadavath, Harindranath, Bobrovs, Raitis, Jaudzems, Kristaps, Riek, Roland
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10251509/
https://www.ncbi.nlm.nih.gov/pubmed/37227050
http://dx.doi.org/10.1021/jacs.3c01392
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author Torres, Felix
Bütikofer, Matthias
Stadler, Gabriela R.
Renn, Alois
Kadavath, Harindranath
Bobrovs, Raitis
Jaudzems, Kristaps
Riek, Roland
author_facet Torres, Felix
Bütikofer, Matthias
Stadler, Gabriela R.
Renn, Alois
Kadavath, Harindranath
Bobrovs, Raitis
Jaudzems, Kristaps
Riek, Roland
author_sort Torres, Felix
collection PubMed
description [Image: see text] While nuclear magnetic resonance (NMR) is regarded as a reference in fragment-based drug design, its implementation in a high-throughput manner is limited by its lack of sensitivity resulting in long acquisition times and high micromolar sample concentrations. Several hyperpolarization approaches could, in principle, improve the sensitivity of NMR also in drug research. However, photochemically induced dynamic nuclear polarization (photo-CIDNP) is the only method that is directly applicable in aqueous solution and agile for scalable implementation using off-the-shelf hardware. With the use of photo-CIDNP, this work demonstrates the detection of weak binders in the millimolar affinity range using low micromolar concentrations down to 5 μM of ligand and 2 μM of target, thereby exploiting the photo-CIDNP-induced polarization twice: (i) increasing the signal-to-noise by one to two orders in magnitude and (ii) polarization-only of the free non-bound molecule allowing identification of binding by polarization quenching, yielding another factor of hundred in time when compared with standard techniques. The interaction detection was performed with single-scan NMR experiments of a duration of 2 to 5 s. Taking advantage of the readiness of photo-CIDNP setup implementation, an automated flow-through platform was designed to screen samples at a screening rate of 1500 samples per day. Furthermore, a 212 compounds photo-CIDNP fragment library is presented, opening an avenue toward a comprehensive fragment-based screening method.
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spelling pubmed-102515092023-06-10 Ultrafast Fragment Screening Using Photo-Hyperpolarized (CIDNP) NMR Torres, Felix Bütikofer, Matthias Stadler, Gabriela R. Renn, Alois Kadavath, Harindranath Bobrovs, Raitis Jaudzems, Kristaps Riek, Roland J Am Chem Soc [Image: see text] While nuclear magnetic resonance (NMR) is regarded as a reference in fragment-based drug design, its implementation in a high-throughput manner is limited by its lack of sensitivity resulting in long acquisition times and high micromolar sample concentrations. Several hyperpolarization approaches could, in principle, improve the sensitivity of NMR also in drug research. However, photochemically induced dynamic nuclear polarization (photo-CIDNP) is the only method that is directly applicable in aqueous solution and agile for scalable implementation using off-the-shelf hardware. With the use of photo-CIDNP, this work demonstrates the detection of weak binders in the millimolar affinity range using low micromolar concentrations down to 5 μM of ligand and 2 μM of target, thereby exploiting the photo-CIDNP-induced polarization twice: (i) increasing the signal-to-noise by one to two orders in magnitude and (ii) polarization-only of the free non-bound molecule allowing identification of binding by polarization quenching, yielding another factor of hundred in time when compared with standard techniques. The interaction detection was performed with single-scan NMR experiments of a duration of 2 to 5 s. Taking advantage of the readiness of photo-CIDNP setup implementation, an automated flow-through platform was designed to screen samples at a screening rate of 1500 samples per day. Furthermore, a 212 compounds photo-CIDNP fragment library is presented, opening an avenue toward a comprehensive fragment-based screening method. American Chemical Society 2023-05-25 /pmc/articles/PMC10251509/ /pubmed/37227050 http://dx.doi.org/10.1021/jacs.3c01392 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Torres, Felix
Bütikofer, Matthias
Stadler, Gabriela R.
Renn, Alois
Kadavath, Harindranath
Bobrovs, Raitis
Jaudzems, Kristaps
Riek, Roland
Ultrafast Fragment Screening Using Photo-Hyperpolarized (CIDNP) NMR
title Ultrafast Fragment Screening Using Photo-Hyperpolarized (CIDNP) NMR
title_full Ultrafast Fragment Screening Using Photo-Hyperpolarized (CIDNP) NMR
title_fullStr Ultrafast Fragment Screening Using Photo-Hyperpolarized (CIDNP) NMR
title_full_unstemmed Ultrafast Fragment Screening Using Photo-Hyperpolarized (CIDNP) NMR
title_short Ultrafast Fragment Screening Using Photo-Hyperpolarized (CIDNP) NMR
title_sort ultrafast fragment screening using photo-hyperpolarized (cidnp) nmr
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10251509/
https://www.ncbi.nlm.nih.gov/pubmed/37227050
http://dx.doi.org/10.1021/jacs.3c01392
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