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Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells
To prioritize gene and protein candidates that may enable the selective identification and removal of senescent cells, we compared gene expression signatures from replicative senescent cells to transcriptomics and proteomics atlases of normal human tissues and cell types. RNA‐seq samples from in vit...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10265163/ https://www.ncbi.nlm.nih.gov/pubmed/37082798 http://dx.doi.org/10.1111/acel.13809 |
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author | Deng, Eden Z. Fleishman, Reid H. Xie, Zhuorui Marino, Giacomo B. Clarke, Daniel J. B. Ma'ayan, Avi |
author_facet | Deng, Eden Z. Fleishman, Reid H. Xie, Zhuorui Marino, Giacomo B. Clarke, Daniel J. B. Ma'ayan, Avi |
author_sort | Deng, Eden Z. |
collection | PubMed |
description | To prioritize gene and protein candidates that may enable the selective identification and removal of senescent cells, we compared gene expression signatures from replicative senescent cells to transcriptomics and proteomics atlases of normal human tissues and cell types. RNA‐seq samples from in vitro senescent cells (6 studies, 13 conditions) were analyzed for identifying targets at the gene and transcript levels that are highly expressed in senescent cells compared to their expression in normal human tissues and cell types. A gene set made of 301 genes called SenoRanger was established based on consensus analysis across studies and backgrounds. Of the identified senescence‐associated targets, 29% of the genes in SenoRanger are also highly differentially expressed in aged tissues from GTEx. The SenoRanger gene set includes previously known as well as novel senescence‐associated genes. Pathway analysis that connected the SenoRanger genes to their functional annotations confirms their potential role in several aging and senescence‐related processes. Overall, SenoRanger provides solid hypotheses about potentially useful targets for identifying and removing senescence cells. |
format | Online Article Text |
id | pubmed-10265163 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-102651632023-06-15 Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells Deng, Eden Z. Fleishman, Reid H. Xie, Zhuorui Marino, Giacomo B. Clarke, Daniel J. B. Ma'ayan, Avi Aging Cell Short Communications To prioritize gene and protein candidates that may enable the selective identification and removal of senescent cells, we compared gene expression signatures from replicative senescent cells to transcriptomics and proteomics atlases of normal human tissues and cell types. RNA‐seq samples from in vitro senescent cells (6 studies, 13 conditions) were analyzed for identifying targets at the gene and transcript levels that are highly expressed in senescent cells compared to their expression in normal human tissues and cell types. A gene set made of 301 genes called SenoRanger was established based on consensus analysis across studies and backgrounds. Of the identified senescence‐associated targets, 29% of the genes in SenoRanger are also highly differentially expressed in aged tissues from GTEx. The SenoRanger gene set includes previously known as well as novel senescence‐associated genes. Pathway analysis that connected the SenoRanger genes to their functional annotations confirms their potential role in several aging and senescence‐related processes. Overall, SenoRanger provides solid hypotheses about potentially useful targets for identifying and removing senescence cells. John Wiley and Sons Inc. 2023-04-20 /pmc/articles/PMC10265163/ /pubmed/37082798 http://dx.doi.org/10.1111/acel.13809 Text en © 2023 The Authors. Aging Cell published by Anatomical Society and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Communications Deng, Eden Z. Fleishman, Reid H. Xie, Zhuorui Marino, Giacomo B. Clarke, Daniel J. B. Ma'ayan, Avi Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells |
title | Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells |
title_full | Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells |
title_fullStr | Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells |
title_full_unstemmed | Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells |
title_short | Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells |
title_sort | computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells |
topic | Short Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10265163/ https://www.ncbi.nlm.nih.gov/pubmed/37082798 http://dx.doi.org/10.1111/acel.13809 |
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