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Unwrapping NPT Simulations to Calculate Diffusion Coefficients

[Image: see text] In molecular dynamics simulations in the NPT ensemble at constant pressure, the size and shape of the periodic simulation box fluctuate with time. For particle images far from the origin, the rescaling of the box by the barostat results in unbounded position displacements. Special...

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Detalles Bibliográficos
Autores principales: Bullerjahn, Jakob Tómas, von Bülow, Sören, Heidari, Maziar, Hénin, Jérôme, Hummer, Gerhard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10269326/
https://www.ncbi.nlm.nih.gov/pubmed/37257090
http://dx.doi.org/10.1021/acs.jctc.3c00308