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Revision of the Peniroquesine Biosynthetic Pathway by Retro-Biosynthetic Theoretical Analysis: Ring Strain Controls the Unique Carbocation Rearrangement Cascade
[Image: see text] Peniroquesine, a sesterterpenoid featuring a unique 5/6/5/6/5 fused pentacyclic ring system, has been known for a long time, but its biosynthetic pathway/mechanism remains elusive. Based on isotopic labeling experiments, a plausible biosynthetic pathway to peniroquesines A–C and th...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10301677/ https://www.ncbi.nlm.nih.gov/pubmed/37388688 http://dx.doi.org/10.1021/jacsau.3c00039 |
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author | Matsuyama, Taro Togashi, Ko Nakano, Moe Sato, Hajime Uchiyama, Masanobu |
author_facet | Matsuyama, Taro Togashi, Ko Nakano, Moe Sato, Hajime Uchiyama, Masanobu |
author_sort | Matsuyama, Taro |
collection | PubMed |
description | [Image: see text] Peniroquesine, a sesterterpenoid featuring a unique 5/6/5/6/5 fused pentacyclic ring system, has been known for a long time, but its biosynthetic pathway/mechanism remains elusive. Based on isotopic labeling experiments, a plausible biosynthetic pathway to peniroquesines A–C and their derivatives was recently proposed, in which the characteristic peniroquesine-type 5/6/5/6/5 pentacyclic skeleton is synthesized from geranyl–farnesyl pyrophosphate (GFPP) via a complex concerted A/B/C-ring formation, repeated reverse-Wagner–Meerwein alkyl shifts, three successive secondary (2°) carbocation intermediates, and a highly distorted trans-fused bicyclo[4.2.1]nonane intermediate. However, our density functional theory calculations do not support this mechanism. By applying a retro-biosynthetic theoretical analysis strategy, we were able to find a preferred pathway for peniroquesine biosynthesis, involving a multistep carbocation cascade including triple skeletal rearrangements, trans-cis isomerization, and 1,3-H shift. This pathway/mechanism is in good agreement with all of the reported isotope-labeling results. |
format | Online Article Text |
id | pubmed-10301677 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-103016772023-06-29 Revision of the Peniroquesine Biosynthetic Pathway by Retro-Biosynthetic Theoretical Analysis: Ring Strain Controls the Unique Carbocation Rearrangement Cascade Matsuyama, Taro Togashi, Ko Nakano, Moe Sato, Hajime Uchiyama, Masanobu JACS Au [Image: see text] Peniroquesine, a sesterterpenoid featuring a unique 5/6/5/6/5 fused pentacyclic ring system, has been known for a long time, but its biosynthetic pathway/mechanism remains elusive. Based on isotopic labeling experiments, a plausible biosynthetic pathway to peniroquesines A–C and their derivatives was recently proposed, in which the characteristic peniroquesine-type 5/6/5/6/5 pentacyclic skeleton is synthesized from geranyl–farnesyl pyrophosphate (GFPP) via a complex concerted A/B/C-ring formation, repeated reverse-Wagner–Meerwein alkyl shifts, three successive secondary (2°) carbocation intermediates, and a highly distorted trans-fused bicyclo[4.2.1]nonane intermediate. However, our density functional theory calculations do not support this mechanism. By applying a retro-biosynthetic theoretical analysis strategy, we were able to find a preferred pathway for peniroquesine biosynthesis, involving a multistep carbocation cascade including triple skeletal rearrangements, trans-cis isomerization, and 1,3-H shift. This pathway/mechanism is in good agreement with all of the reported isotope-labeling results. American Chemical Society 2023-05-15 /pmc/articles/PMC10301677/ /pubmed/37388688 http://dx.doi.org/10.1021/jacsau.3c00039 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Matsuyama, Taro Togashi, Ko Nakano, Moe Sato, Hajime Uchiyama, Masanobu Revision of the Peniroquesine Biosynthetic Pathway by Retro-Biosynthetic Theoretical Analysis: Ring Strain Controls the Unique Carbocation Rearrangement Cascade |
title | Revision of the Peniroquesine
Biosynthetic Pathway
by Retro-Biosynthetic Theoretical Analysis: Ring Strain Controls the
Unique Carbocation Rearrangement Cascade |
title_full | Revision of the Peniroquesine
Biosynthetic Pathway
by Retro-Biosynthetic Theoretical Analysis: Ring Strain Controls the
Unique Carbocation Rearrangement Cascade |
title_fullStr | Revision of the Peniroquesine
Biosynthetic Pathway
by Retro-Biosynthetic Theoretical Analysis: Ring Strain Controls the
Unique Carbocation Rearrangement Cascade |
title_full_unstemmed | Revision of the Peniroquesine
Biosynthetic Pathway
by Retro-Biosynthetic Theoretical Analysis: Ring Strain Controls the
Unique Carbocation Rearrangement Cascade |
title_short | Revision of the Peniroquesine
Biosynthetic Pathway
by Retro-Biosynthetic Theoretical Analysis: Ring Strain Controls the
Unique Carbocation Rearrangement Cascade |
title_sort | revision of the peniroquesine
biosynthetic pathway
by retro-biosynthetic theoretical analysis: ring strain controls the
unique carbocation rearrangement cascade |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10301677/ https://www.ncbi.nlm.nih.gov/pubmed/37388688 http://dx.doi.org/10.1021/jacsau.3c00039 |
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