WarpSTR: determining tandem repeat lengths using raw nanopore signals

MOTIVATION: Short tandem repeats (STRs) are regions of a genome containing many consecutive copies of the same short motif, possibly with small variations. Analysis of STRs has many clinical uses but is limited by technology mainly due to STRs surpassing the used read length. Nanopore sequencing, as...

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Detalles Bibliográficos
Autores principales: Sitarčík, Jozef, Vinař, Tomáš, Brejová, Broňa, Krampl, Werner, Budiš, Jaroslav, Radvánszky, Ján, Lucká, Mária
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Original Paper
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10307940/
https://www.ncbi.nlm.nih.gov/pubmed/37326967
http://dx.doi.org/10.1093/bioinformatics/btad388

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10307940/
https://www.ncbi.nlm.nih.gov/pubmed/37326967
http://dx.doi.org/10.1093/bioinformatics/btad388

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