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Non-contrast CT synthesis using patch-based cycle-consistent generative adversarial network (Cycle-GAN) for radiomics and deep learning in the era of COVID-19

Handcrafted and deep learning (DL) radiomics are popular techniques used to develop computed tomography (CT) imaging-based artificial intelligence models for COVID-19 research. However, contrast heterogeneity from real-world datasets may impair model performance. Contrast-homogenous datasets present...

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Autores principales: Kalantar, Reza, Hindocha, Sumeet, Hunter, Benjamin, Sharma, Bhupinder, Khan, Nasir, Koh, Dow-Mu, Ahmed, Merina, Aboagye, Eric O., Lee, Richard W., Blackledge, Matthew D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10310777/
https://www.ncbi.nlm.nih.gov/pubmed/37386097
http://dx.doi.org/10.1038/s41598-023-36712-1
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author Kalantar, Reza
Hindocha, Sumeet
Hunter, Benjamin
Sharma, Bhupinder
Khan, Nasir
Koh, Dow-Mu
Ahmed, Merina
Aboagye, Eric O.
Lee, Richard W.
Blackledge, Matthew D.
author_facet Kalantar, Reza
Hindocha, Sumeet
Hunter, Benjamin
Sharma, Bhupinder
Khan, Nasir
Koh, Dow-Mu
Ahmed, Merina
Aboagye, Eric O.
Lee, Richard W.
Blackledge, Matthew D.
author_sort Kalantar, Reza
collection PubMed
description Handcrafted and deep learning (DL) radiomics are popular techniques used to develop computed tomography (CT) imaging-based artificial intelligence models for COVID-19 research. However, contrast heterogeneity from real-world datasets may impair model performance. Contrast-homogenous datasets present a potential solution. We developed a 3D patch-based cycle-consistent generative adversarial network (cycle-GAN) to synthesize non-contrast images from contrast CTs, as a data homogenization tool. We used a multi-centre dataset of 2078 scans from 1,650 patients with COVID-19. Few studies have previously evaluated GAN-generated images with handcrafted radiomics, DL and human assessment tasks. We evaluated the performance of our cycle-GAN with these three approaches. In a modified Turing-test, human experts identified synthetic vs acquired images, with a false positive rate of 67% and Fleiss’ Kappa 0.06, attesting to the photorealism of the synthetic images. However, on testing performance of machine learning classifiers with radiomic features, performance decreased with use of synthetic images. Marked percentage difference was noted in feature values between pre- and post-GAN non-contrast images. With DL classification, deterioration in performance was observed with synthetic images. Our results show that whilst GANs can produce images sufficient to pass human assessment, caution is advised before GAN-synthesized images are used in medical imaging applications.
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spelling pubmed-103107772023-07-01 Non-contrast CT synthesis using patch-based cycle-consistent generative adversarial network (Cycle-GAN) for radiomics and deep learning in the era of COVID-19 Kalantar, Reza Hindocha, Sumeet Hunter, Benjamin Sharma, Bhupinder Khan, Nasir Koh, Dow-Mu Ahmed, Merina Aboagye, Eric O. Lee, Richard W. Blackledge, Matthew D. Sci Rep Article Handcrafted and deep learning (DL) radiomics are popular techniques used to develop computed tomography (CT) imaging-based artificial intelligence models for COVID-19 research. However, contrast heterogeneity from real-world datasets may impair model performance. Contrast-homogenous datasets present a potential solution. We developed a 3D patch-based cycle-consistent generative adversarial network (cycle-GAN) to synthesize non-contrast images from contrast CTs, as a data homogenization tool. We used a multi-centre dataset of 2078 scans from 1,650 patients with COVID-19. Few studies have previously evaluated GAN-generated images with handcrafted radiomics, DL and human assessment tasks. We evaluated the performance of our cycle-GAN with these three approaches. In a modified Turing-test, human experts identified synthetic vs acquired images, with a false positive rate of 67% and Fleiss’ Kappa 0.06, attesting to the photorealism of the synthetic images. However, on testing performance of machine learning classifiers with radiomic features, performance decreased with use of synthetic images. Marked percentage difference was noted in feature values between pre- and post-GAN non-contrast images. With DL classification, deterioration in performance was observed with synthetic images. Our results show that whilst GANs can produce images sufficient to pass human assessment, caution is advised before GAN-synthesized images are used in medical imaging applications. Nature Publishing Group UK 2023-06-29 /pmc/articles/PMC10310777/ /pubmed/37386097 http://dx.doi.org/10.1038/s41598-023-36712-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kalantar, Reza
Hindocha, Sumeet
Hunter, Benjamin
Sharma, Bhupinder
Khan, Nasir
Koh, Dow-Mu
Ahmed, Merina
Aboagye, Eric O.
Lee, Richard W.
Blackledge, Matthew D.
Non-contrast CT synthesis using patch-based cycle-consistent generative adversarial network (Cycle-GAN) for radiomics and deep learning in the era of COVID-19
title Non-contrast CT synthesis using patch-based cycle-consistent generative adversarial network (Cycle-GAN) for radiomics and deep learning in the era of COVID-19
title_full Non-contrast CT synthesis using patch-based cycle-consistent generative adversarial network (Cycle-GAN) for radiomics and deep learning in the era of COVID-19
title_fullStr Non-contrast CT synthesis using patch-based cycle-consistent generative adversarial network (Cycle-GAN) for radiomics and deep learning in the era of COVID-19
title_full_unstemmed Non-contrast CT synthesis using patch-based cycle-consistent generative adversarial network (Cycle-GAN) for radiomics and deep learning in the era of COVID-19
title_short Non-contrast CT synthesis using patch-based cycle-consistent generative adversarial network (Cycle-GAN) for radiomics and deep learning in the era of COVID-19
title_sort non-contrast ct synthesis using patch-based cycle-consistent generative adversarial network (cycle-gan) for radiomics and deep learning in the era of covid-19
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10310777/
https://www.ncbi.nlm.nih.gov/pubmed/37386097
http://dx.doi.org/10.1038/s41598-023-36712-1
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