Cargando…
Scalable sequence database search using partitioned aggregated Bloom comb trees
MOTIVATION: The Sequence Read Archive public database has reached 45 petabytes of raw sequences and doubles its nucleotide content every 2 years. Although BLAST-like methods can routinely search for a sequence in a small collection of genomes, making searchable immense public resources accessible is...
Autores principales: | Marchet, Camille, Limasset, Antoine |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10311332/ https://www.ncbi.nlm.nih.gov/pubmed/37387170 http://dx.doi.org/10.1093/bioinformatics/btad225 |
Ejemplares similares
-
Scalable long read self-correction and assembly polishing with multiple sequence alignment
por: Morisse, Pierre, et al.
Publicado: (2021) -
Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes
por: Alanko, Jarno N, et al.
Publicado: (2023) -
Draft Genome Sequence of an Epibiotic Bacterium, Bacillus cereus, Isolated from Cyanobacterial Blooms in Lake Taihu, China
por: Chen, Xiaoyuan, et al.
Publicado: (2023) -
Draft Genome Sequences of Bacteria with Cyanocidal Potential Isolated from Eutrophic Waters Associated with Cyanobacterial Harmful Algal Blooms
por: Lefler, Forrest W., et al.
Publicado: (2023) -
Draft Genome Sequence of Pseudomonas sp. Strain M7D1, Isolated from the Rhizosphere of Desert Bloom Plants
por: Poblete-Morales, Matías, et al.
Publicado: (2019)