Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes

MOTIVATION: Huge datasets containing whole-genome sequences of bacterial strains are now commonplace and represent a rich and important resource for modern genomic epidemiology and metagenomics. In order to efficiently make use of these datasets, efficient indexing data structures—that are both scal...

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Detalles Bibliográficos
Autores principales: Alanko, Jarno N, Vuohtoniemi, Jaakko, Mäklin, Tommi, Puglisi, Simon J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Genome Sequence Analysis
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10311346/
https://www.ncbi.nlm.nih.gov/pubmed/37387143
http://dx.doi.org/10.1093/bioinformatics/btad233

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10311346/
https://www.ncbi.nlm.nih.gov/pubmed/37387143
http://dx.doi.org/10.1093/bioinformatics/btad233

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