Cargando…

Accelerated somatic mutation calling for whole-genome and whole-exome sequencing data from heterogenous tumor samples

Accurate detection of somatic mutations in DNA sequencing data is a fundamental prerequisite for cancer research. Previous analytical challenge was overcome by consensus mutation calling from four to five popular callers. This, however, increases the already nontrivial computing time from individual...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ji, Shuangxi, Zhu, Tong, Sethia, Ankit, Wang, Wenyi
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10350007/ https://www.ncbi.nlm.nih.gov/pubmed/37461467 http://dx.doi.org/10.1101/2023.07.04.547569

Ejemplares similares

Comparison of somatic mutation calling methods in amplicon and whole exome sequence data
por: Xu, Huilei, et al.
Publicado: (2014)

Whole-exome sequencing identifies somatic mutations and intratumor heterogeneity in inflammatory breast cancer
por: Luo, Rui, et al.
Publicado: (2021)

Precise Identification of Recurrent Somatic Mutations in Oral Cancer Through Whole-Exome Sequencing Using Multiple Mutation Calling Pipelines
por: Lin, Li-Han, et al.
Publicado: (2021)

Whole exome sequencing identifies somatic ATRX mutations in pheochromocytomas and paragangliomas
por: Fishbein, Lauren, et al.
Publicado: (2015)

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
por: Bailey, Matthew H., et al.
Publicado: (2020)

CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data
por: Yu, Zhenhua, et al.
Publicado: (2016)

Sequential Whole Exome Sequencing Reveals Somatic Mutations Associated with Platinum Response in NSCLC
por: Guo, Ao-Xiang, et al.
Publicado: (2020)

Identification of somatic mutations using whole-exome sequencing in Korean patients with acute myeloid leukemia
por: Heo, Seong Gu, et al.
Publicado: (2017)

Failure to Identify Somatic Mutations in Monozygotic Twins Discordant for Schizophrenia by Whole Exome Sequencing
por: Lyu, Nan, et al.
Publicado: (2016)

Whole-Exome Sequencing Identifies Novel Somatic Mutations in Chinese Breast Cancer Patients
por: Zhang, Yanfeng, et al.
Publicado: (2015)

Somatic Mutations from Whole Exome Sequencing Analysis of the Patients with Biliary Tract Cancer
por: Yoon, Kyong-Ah, et al.
Publicado: (2018)

Whole-exome sequencing identifies somatic mutations associated with lung cancer metastasis to the brain
por: Liu, Zhenghao, et al.
Publicado: (2021)

Identification of somatic alterations in lipoma using whole exome sequencing
por: Kanojia, Deepika, et al.
Publicado: (2019)

Experimental Study of Somatic Variants of Osteosarcoma by Whole-Exome Sequencing
por: Hou, Jingyu, et al.
Publicado: (2020)

Data on somatic mutations obtained by whole exome sequencing of FFPE tissue samples from Russian patients with prostate cancer
por: Nikitina, A.S., et al.
Publicado: (2019)

Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
por: Bailey, Matthew H., et al.
Publicado: (2020)

Multiple Variant Calling Pipelines in Wheat Whole Exome Sequencing
por: Cagirici, H. Busra, et al.
Publicado: (2021)

Detection of Somatic Mutations in Exome Sequencing of Tumor-only Samples
por: Hsu, Yu-Chin, et al.
Publicado: (2017)

Somatic Genetic Variation in Solid Pseudopapillary Tumor of the Pancreas by Whole Exome Sequencing
por: Guo, Meng, et al.
Publicado: (2017)

Whole exome sequencing reveals somatic mutations in HRAS and KRAS which cause nevus sebaceus
por: Levinsohn, Jonathan L., et al.
Publicado: (2012)

Identification of somatic and germline mutations using whole exome sequencing of congenital acute lymphoblastic leukemia
por: Chang, Vivian Y, et al.
Publicado: (2013)

Somatic mutations in renal cell carcinomas from Chinese patients revealed by whole exome sequencing
por: Wang, Jie, et al.
Publicado: (2018)

Whole-Exome Sequencing Characterized the Landscape of Somatic Mutations and Pathways in Colorectal Cancer Liver Metastasis
por: Feng, Liuxing, et al.
Publicado: (2019)

Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing
por: Helman, Elena, et al.
Publicado: (2014)

Mutation discovery in mice by whole exome sequencing
por: Fairfield, Heather, et al.
Publicado: (2011)

Reducing INDEL calling errors in whole genome and exome sequencing data
por: Fang, Han, et al.
Publicado: (2014)

Assessing reliability of intra-tumor heterogeneity estimates from single sample whole exome sequencing data
por: Abécassis, Judith, et al.
Publicado: (2019)

Whole-exome sequencing of primary plasma cell leukemia discloses heterogeneous mutational patterns
por: Cifola, Ingrid, et al.
Publicado: (2015)

Identification of Somatic Genetic Alterations Using Whole-Exome Sequencing of Uterine Leiomyosarcoma Tumors
por: Chen, Lihua, et al.
Publicado: (2021)

BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU
por: Luo, Ruibang, et al.
Publicado: (2014)

Reliability of Whole-Exome Sequencing for Assessing Intratumor Genetic Heterogeneity
por: Shi, Weiwei, et al.
Publicado: (2018)

Whole-exome sequencing to identify somatic mutations in peritoneal metastatic gastric adenocarcinoma: A preliminary study
por: Liu, Hao, et al.
Publicado: (2016)

Whole-Exome Sequencing Identifies Somatic Mutations Associated With Mortality in Metastatic Clear Cell Kidney Carcinoma
por: Mendoza-Alvarez, Alejandro, et al.
Publicado: (2019)

Germline and somatic mutations in the pathology of pineal cyst: A whole‐exome sequencing study of 93 individuals
por: Yan, Yuanqing, et al.
Publicado: (2021)

Somatic Mutation Profiling of Papillary Thyroid Carcinomas by Whole-exome Sequencing and Its Relationship with Clinical Characteristics
por: Qi, Tingyue, et al.
Publicado: (2021)

Intersect-then-combine approach: improving the performance of somatic variant calling in whole exome sequencing data using multiple aligners and callers
por: Callari, Maurizio, et al.
Publicado: (2017)

Whole-exome sequencing capture kit biases yield false negative mutation calls in TCGA cohorts
por: Wang, Victor G., et al.
Publicado: (2018)

Whole exome sequencing reveals novel somatic alterations in neuroblastoma patients with chemotherapy
por: Duan, Chao, et al.
Publicado: (2018)

Improved Variant Calling Accuracy by Merging Replicates in Whole-Exome Sequencing Studies
por: Zhang, Yanfeng, et al.
Publicado: (2014)

Protocol for unbiased, consolidated variant calling from whole exome sequencing data
por: Verrou, Kleio-Maria, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_p5juf03cjo1cgokrp62hjc3o7r