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Scdrake: a reproducible and scalable pipeline for scRNA-seq data analysis

MOTIVATION: While the workflow for primary analysis of single-cell RNA-seq (scRNA-seq) data is well established, the secondary analysis of the feature-barcode matrix is usually done by custom scripts. There is no fully automated pipeline in the R statistical environment, which would follow the curre...

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Detalles Bibliográficos
Autores principales: Kubovčiak, Jan, Kolář, Michal, Novotný, Jiří
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10351969/
https://www.ncbi.nlm.nih.gov/pubmed/37465398
http://dx.doi.org/10.1093/bioadv/vbad089