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Generation of gene-of-interest double allele knockout clones in primary human T cells by CRISPR

Gene-of-interest (GOI) knockout is an important technique to study the genetic mechanisms of T cells. Here, we present a protocol to generate GOI double allele gene knockouts in primary human T cells by CRISPR, thus depleting proteins of interest expressed intracellularly or extracellularly in prima...

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Detalles Bibliográficos
Autores principales: Wu, Ling, Tan, Jia Chi, Gascoigne, Nicholas R.J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10362176/
https://www.ncbi.nlm.nih.gov/pubmed/37432856
http://dx.doi.org/10.1016/j.xpro.2023.102445
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author Wu, Ling
Tan, Jia Chi
Gascoigne, Nicholas R.J.
author_facet Wu, Ling
Tan, Jia Chi
Gascoigne, Nicholas R.J.
author_sort Wu, Ling
collection PubMed
description Gene-of-interest (GOI) knockout is an important technique to study the genetic mechanisms of T cells. Here, we present a protocol to generate GOI double allele gene knockouts in primary human T cells by CRISPR, thus depleting proteins of interest expressed intracellularly or extracellularly in primary T cells. We describe steps for gRNA selection and efficiency validation, homology-directed repair (HDR) DNA template design and cloning, and genome editing and HDR gene insertion. We then detail clone isolation and GOI knockout validation. For complete details on the use and execution of this protocol, please refer to Wu et al.(1)
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spelling pubmed-103621762023-07-23 Generation of gene-of-interest double allele knockout clones in primary human T cells by CRISPR Wu, Ling Tan, Jia Chi Gascoigne, Nicholas R.J. STAR Protoc Protocol Gene-of-interest (GOI) knockout is an important technique to study the genetic mechanisms of T cells. Here, we present a protocol to generate GOI double allele gene knockouts in primary human T cells by CRISPR, thus depleting proteins of interest expressed intracellularly or extracellularly in primary T cells. We describe steps for gRNA selection and efficiency validation, homology-directed repair (HDR) DNA template design and cloning, and genome editing and HDR gene insertion. We then detail clone isolation and GOI knockout validation. For complete details on the use and execution of this protocol, please refer to Wu et al.(1) Elsevier 2023-07-09 /pmc/articles/PMC10362176/ /pubmed/37432856 http://dx.doi.org/10.1016/j.xpro.2023.102445 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Protocol
Wu, Ling
Tan, Jia Chi
Gascoigne, Nicholas R.J.
Generation of gene-of-interest double allele knockout clones in primary human T cells by CRISPR
title Generation of gene-of-interest double allele knockout clones in primary human T cells by CRISPR
title_full Generation of gene-of-interest double allele knockout clones in primary human T cells by CRISPR
title_fullStr Generation of gene-of-interest double allele knockout clones in primary human T cells by CRISPR
title_full_unstemmed Generation of gene-of-interest double allele knockout clones in primary human T cells by CRISPR
title_short Generation of gene-of-interest double allele knockout clones in primary human T cells by CRISPR
title_sort generation of gene-of-interest double allele knockout clones in primary human t cells by crispr
topic Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10362176/
https://www.ncbi.nlm.nih.gov/pubmed/37432856
http://dx.doi.org/10.1016/j.xpro.2023.102445
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