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Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex

Opioid use disorder (OUD) is influenced by genetic and environmental factors. While recent research suggests epigenetic disturbances in OUD, this is mostly limited to DNA methylation (5mC). DNA hydroxymethylation (5hmC) has been widely understudied. We conducted a multi-omics profiling of OUD in a m...

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Autores principales: Rompala, Gregory, Nagamatsu, Sheila T., Martínez-Magaña, José Jaime, Nuñez-Ríos, Diana L., Wang, Jiawei, Girgenti, Matthew J., Krystal, John H., Gelernter, Joel, Hurd, Yasmin L., Montalvo-Ortiz, Janitza L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10382503/
https://www.ncbi.nlm.nih.gov/pubmed/37507366
http://dx.doi.org/10.1038/s41467-023-40285-y
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author Rompala, Gregory
Nagamatsu, Sheila T.
Martínez-Magaña, José Jaime
Nuñez-Ríos, Diana L.
Wang, Jiawei
Girgenti, Matthew J.
Krystal, John H.
Gelernter, Joel
Hurd, Yasmin L.
Montalvo-Ortiz, Janitza L.
author_facet Rompala, Gregory
Nagamatsu, Sheila T.
Martínez-Magaña, José Jaime
Nuñez-Ríos, Diana L.
Wang, Jiawei
Girgenti, Matthew J.
Krystal, John H.
Gelernter, Joel
Hurd, Yasmin L.
Montalvo-Ortiz, Janitza L.
author_sort Rompala, Gregory
collection PubMed
description Opioid use disorder (OUD) is influenced by genetic and environmental factors. While recent research suggests epigenetic disturbances in OUD, this is mostly limited to DNA methylation (5mC). DNA hydroxymethylation (5hmC) has been widely understudied. We conducted a multi-omics profiling of OUD in a male cohort, integrating neuronal-specific 5mC and 5hmC as well as gene expression profiles from human postmortem orbitofrontal cortex (OUD = 12; non-OUD = 26). Single locus methylomic analysis and co-methylation analysis showed a higher number of OUD-associated genes and gene networks for 5hmC compared to 5mC; these were enriched for GPCR, Wnt, neurogenesis, and opioid signaling. 5hmC marks also showed a higher correlation with gene expression patterns and enriched for GWAS of psychiatric traits. Drug interaction analysis revealed interactions with opioid-related drugs, some used as OUD treatments. Our multi-omics findings suggest an important role of 5hmC and reveal loci epigenetically dysregulated in OFC neurons of individuals with OUD.
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spelling pubmed-103825032023-07-30 Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex Rompala, Gregory Nagamatsu, Sheila T. Martínez-Magaña, José Jaime Nuñez-Ríos, Diana L. Wang, Jiawei Girgenti, Matthew J. Krystal, John H. Gelernter, Joel Hurd, Yasmin L. Montalvo-Ortiz, Janitza L. Nat Commun Article Opioid use disorder (OUD) is influenced by genetic and environmental factors. While recent research suggests epigenetic disturbances in OUD, this is mostly limited to DNA methylation (5mC). DNA hydroxymethylation (5hmC) has been widely understudied. We conducted a multi-omics profiling of OUD in a male cohort, integrating neuronal-specific 5mC and 5hmC as well as gene expression profiles from human postmortem orbitofrontal cortex (OUD = 12; non-OUD = 26). Single locus methylomic analysis and co-methylation analysis showed a higher number of OUD-associated genes and gene networks for 5hmC compared to 5mC; these were enriched for GPCR, Wnt, neurogenesis, and opioid signaling. 5hmC marks also showed a higher correlation with gene expression patterns and enriched for GWAS of psychiatric traits. Drug interaction analysis revealed interactions with opioid-related drugs, some used as OUD treatments. Our multi-omics findings suggest an important role of 5hmC and reveal loci epigenetically dysregulated in OFC neurons of individuals with OUD. Nature Publishing Group UK 2023-07-28 /pmc/articles/PMC10382503/ /pubmed/37507366 http://dx.doi.org/10.1038/s41467-023-40285-y Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Rompala, Gregory
Nagamatsu, Sheila T.
Martínez-Magaña, José Jaime
Nuñez-Ríos, Diana L.
Wang, Jiawei
Girgenti, Matthew J.
Krystal, John H.
Gelernter, Joel
Hurd, Yasmin L.
Montalvo-Ortiz, Janitza L.
Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex
title Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex
title_full Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex
title_fullStr Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex
title_full_unstemmed Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex
title_short Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex
title_sort profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10382503/
https://www.ncbi.nlm.nih.gov/pubmed/37507366
http://dx.doi.org/10.1038/s41467-023-40285-y
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