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Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex
Opioid use disorder (OUD) is influenced by genetic and environmental factors. While recent research suggests epigenetic disturbances in OUD, this is mostly limited to DNA methylation (5mC). DNA hydroxymethylation (5hmC) has been widely understudied. We conducted a multi-omics profiling of OUD in a m...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10382503/ https://www.ncbi.nlm.nih.gov/pubmed/37507366 http://dx.doi.org/10.1038/s41467-023-40285-y |
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author | Rompala, Gregory Nagamatsu, Sheila T. Martínez-Magaña, José Jaime Nuñez-Ríos, Diana L. Wang, Jiawei Girgenti, Matthew J. Krystal, John H. Gelernter, Joel Hurd, Yasmin L. Montalvo-Ortiz, Janitza L. |
author_facet | Rompala, Gregory Nagamatsu, Sheila T. Martínez-Magaña, José Jaime Nuñez-Ríos, Diana L. Wang, Jiawei Girgenti, Matthew J. Krystal, John H. Gelernter, Joel Hurd, Yasmin L. Montalvo-Ortiz, Janitza L. |
author_sort | Rompala, Gregory |
collection | PubMed |
description | Opioid use disorder (OUD) is influenced by genetic and environmental factors. While recent research suggests epigenetic disturbances in OUD, this is mostly limited to DNA methylation (5mC). DNA hydroxymethylation (5hmC) has been widely understudied. We conducted a multi-omics profiling of OUD in a male cohort, integrating neuronal-specific 5mC and 5hmC as well as gene expression profiles from human postmortem orbitofrontal cortex (OUD = 12; non-OUD = 26). Single locus methylomic analysis and co-methylation analysis showed a higher number of OUD-associated genes and gene networks for 5hmC compared to 5mC; these were enriched for GPCR, Wnt, neurogenesis, and opioid signaling. 5hmC marks also showed a higher correlation with gene expression patterns and enriched for GWAS of psychiatric traits. Drug interaction analysis revealed interactions with opioid-related drugs, some used as OUD treatments. Our multi-omics findings suggest an important role of 5hmC and reveal loci epigenetically dysregulated in OFC neurons of individuals with OUD. |
format | Online Article Text |
id | pubmed-10382503 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-103825032023-07-30 Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex Rompala, Gregory Nagamatsu, Sheila T. Martínez-Magaña, José Jaime Nuñez-Ríos, Diana L. Wang, Jiawei Girgenti, Matthew J. Krystal, John H. Gelernter, Joel Hurd, Yasmin L. Montalvo-Ortiz, Janitza L. Nat Commun Article Opioid use disorder (OUD) is influenced by genetic and environmental factors. While recent research suggests epigenetic disturbances in OUD, this is mostly limited to DNA methylation (5mC). DNA hydroxymethylation (5hmC) has been widely understudied. We conducted a multi-omics profiling of OUD in a male cohort, integrating neuronal-specific 5mC and 5hmC as well as gene expression profiles from human postmortem orbitofrontal cortex (OUD = 12; non-OUD = 26). Single locus methylomic analysis and co-methylation analysis showed a higher number of OUD-associated genes and gene networks for 5hmC compared to 5mC; these were enriched for GPCR, Wnt, neurogenesis, and opioid signaling. 5hmC marks also showed a higher correlation with gene expression patterns and enriched for GWAS of psychiatric traits. Drug interaction analysis revealed interactions with opioid-related drugs, some used as OUD treatments. Our multi-omics findings suggest an important role of 5hmC and reveal loci epigenetically dysregulated in OFC neurons of individuals with OUD. Nature Publishing Group UK 2023-07-28 /pmc/articles/PMC10382503/ /pubmed/37507366 http://dx.doi.org/10.1038/s41467-023-40285-y Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Rompala, Gregory Nagamatsu, Sheila T. Martínez-Magaña, José Jaime Nuñez-Ríos, Diana L. Wang, Jiawei Girgenti, Matthew J. Krystal, John H. Gelernter, Joel Hurd, Yasmin L. Montalvo-Ortiz, Janitza L. Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex |
title | Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex |
title_full | Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex |
title_fullStr | Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex |
title_full_unstemmed | Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex |
title_short | Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex |
title_sort | profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10382503/ https://www.ncbi.nlm.nih.gov/pubmed/37507366 http://dx.doi.org/10.1038/s41467-023-40285-y |
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