Cargando…

Local Disordered Region Sampling (LDRS) for Ensemble Modeling of Proteins with Experimentally Undetermined or Low Confidence Prediction Segments

The Local Disordered Region Sampling (LDRS, pronounced loaders) tool, developed for the IDPConformerGenerator platform (Teixeira et al. 2022), provides a method for generating all-atom conformations of intrinsically disordered regions (IDRs) at N- and C-termini of and in loops or linkers between fol...

Descripción completa

Detalles Bibliográficos
Autores principales:	Liu, Zi Hao, Teixeira, João M.C., Zhang, Oufan, Tsangaris, Thomas E., Li, Jie, Gradinaru, Claudiu C., Head-Gordon, Teresa, Forman-Kay, Julie D.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10402175/ https://www.ncbi.nlm.nih.gov/pubmed/37546943 http://dx.doi.org/10.1101/2023.07.25.550520

Ejemplares similares

Extended experimental inferential structure determination method in determining the structural ensembles of disordered protein states
por: Lincoff, James, et al.
Publicado: (2020)

IDPConformerGenerator: A Flexible Software Suite for Sampling the Conformational Space of Disordered Protein States
por: Teixeira, João M. C., et al.
Publicado: (2022)

Integrative Conformational Ensembles of Sic1 Using Different Initial Pools and Optimization Methods
por: Gomes, Gregory-Neal W., et al.
Publicado: (2022)

Leak Proof PDBBind: A Reorganized Dataset of Protein-Ligand Complexes for More Generalizable Binding Affinity Prediction
por: Li, Jie, et al.
Publicado: (2023)

Accidents and undetermined deaths: re-evaluation of nationwide samples from the Scandinavian countries
por: Tøllefsen, Ingvild Maria, et al.
Publicado: (2016)

Pseudomelanosis Duodeni of Undetermined Etiology
por: Jain, Samit S., et al.
Publicado: (2012)

Image Segmentation Based on Statistical Confidence Intervals
por: Buenestado, Pablo, et al.
Publicado: (2018)

The Correlation of Age with Prognosis of Atypia of Undetermined Significance and Follicular Lesion of Undetermined Significance in Thyroid Nodules
por: Kaliszewski, Krzysztof, et al.
Publicado: (2021)

PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins
por: Lazar, Tamas, et al.
Publicado: (2020)

Evidence of Functional Protein Dynamics from X-Ray Crystallographic Ensembles
por: Kohn, Jonathan E., et al.
Publicado: (2010)

Malignancy rate in thyroid nodules categorized as atypia of undetermined significance or follicular lesion of undetermined significance - An institutional experience
por: Chandra, Smita, et al.
Publicado: (2017)

Thyroid Bethesda Atypia of Undetermined Significance or Follicular Lesion of Undetermined Significance (AUS/FLUS): A Heterogenous Group
por: Maity, Priyanka, et al.
Publicado: (2019)

Robust, Primitive, and Unsupervised Quality Estimation for Segmentation Ensembles
por: Kofler, Florian, et al.
Publicado: (2021)

A benchmark dataset for Hydrogen Combustion
por: Guan, Xingyi, et al.
Publicado: (2022)

NewtonNet: a Newtonian message passing network for deep learning of interatomic potentials and forces
por: Haghighatlari, Mojtaba, et al.
Publicado: (2022)

Faults Diagnostics of Railway Axle Bearings Based on IMF’s Confidence Index Algorithm for Ensemble EMD
por: Yi, Cai, et al.
Publicado: (2015)

Malignancy Risk and Related Factors of Atypia of Undetermined Significance/Follicular Lesion of Undetermined Significance in Thyroid Fine Needle Aspiration
por: Hong, So-hyeon, et al.
Publicado: (2018)

The “Undetermined Significance” of (18)F-FDG PET/CT or PET/MRI in Patients with Monoclonal Gammopathy of Undetermined Significance (MGUS)
por: Treglia, Giorgio, et al.
Publicado: (2021)

Diagnosing thyroid nodules with atypia of undetermined significance/follicular lesion of undetermined significance cytology with the deep convolutional neural network
por: Youn, Inyoung, et al.
Publicado: (2021)

Segmental and suprasegmental encoding of speaker confidence in Wuxi dialect vowels
por: Ji, Yujie, et al.
Publicado: (2022)

ChatGPT Research Group for Optimizing the Crystallinity of MOFs and COFs
por: Zheng, Zhiling, et al.
Publicado: (2023)

Immunophenotypic studies of monoclonal gammopathy of undetermined significance
por: Olteanu, Horatiu, et al.
Publicado: (2008)

Monoclonal Gammopathy of Undetermined Significance-associated Scleromyxoedema
por: Baxi, Kalgi D., et al.
Publicado: (2019)

Conjunctival Pyogenic Granuloma: Cases with Undetermined Etiologies
por: Lee, Yunjin, et al.
Publicado: (2019)

Clinical Features of Embolic Stroke of Undetermined Source
por: Wang, Weijing, et al.
Publicado: (2020)

Atrial cardiopathy in embolic stroke of undetermined source
por: Chen, Jing, et al.
Publicado: (2021)

Kidney Transplantation and Monoclonal Gammopathy of Undetermined Significance
por: Aslam, Nabeel, et al.
Publicado: (2021)

Pulmonary Arteriovenous Malformation can be Associated with Embolic Stroke of Undetermined Source (ESUS)
por: da Cruz, Mariana, et al.
Publicado: (2019)

Characterization of Monoclonal Gammopathy of Undetermined Significance by Calorimetric Analysis of Blood Serum Proteome
por: Barceló, Francisca, et al.
Publicado: (2015)

Benign Aspirates on Follow-Up FNA May Be Enough in Patients with Initial Atypia of Undetermined Significance/Follicular Lesion of Undetermined Significance
por: Kim, Ga Ram, et al.
Publicado: (2014)

Clinico-cytopathological subcategorization in thyroid nodules of atypia of undetermined significance/follicular lesion of undetermined significance using the TIRADS and Bethesda classifications
por: Babajani, Amirhesam, et al.
Publicado: (2023)

Ensembles of Convolutional Neural Networks and Transformers for Polyp Segmentation
por: Nanni, Loris, et al.
Publicado: (2023)

Non-cooperative 4E-BP2 folding with exchange between eIF4E-binding and binding-incompatible states tunes cap-dependent translation inhibition
por: Dawson, Jennifer E., et al.
Publicado: (2020)

Genetic differences between suicide deaths and deaths of undetermined intent
por: Edwards, Alexis C., et al.
Publicado: (2022)

Confidence intervals and sample size planning for optimal cutpoints
por: Thiele, Christian, et al.
Publicado: (2023)

Age-dependent sex differences in non-stenotic intracranial plaque of embolic stroke of undetermined source
por: Luo, Na, et al.
Publicado: (2023)

Knowledge distillation with ensembles of convolutional neural networks for medical image segmentation
por: Noothout, Julia M. H., et al.
Publicado: (2022)

Monoclonal Gammopathy of Undetermined Significance (MGUS)—Not So Asymptomatic after All
por: Lomas, Oliver C., et al.
Publicado: (2020)

A Neuroendocrine Carcinoma of Undetermined Origin in a Dog
por: Kuwata, Kazunori, et al.
Publicado: (2010)

Polymyalgia rheumatica presenting as nocturnal fever of undetermined origin
por: Al Mahdy, Husayn, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_23o9avcj71vftb43q193onhhil