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The minimal intrinsic stochasticity of constitutively expressed eukaryotic genes is sub-Poissonian

Gene expression inherently gives rise to stochastic variation (“noise”) in the production of gene products. Minimizing noise is crucial for ensuring reliable cellular functions. However, noise cannot be suppressed below a certain intrinsic limit. For constitutively expressed genes, this limit is typ...

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Autores principales: Weidemann, Douglas E., Holehouse, James, Singh, Abhyudai, Grima, Ramon, Hauf, Silke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10411910/
https://www.ncbi.nlm.nih.gov/pubmed/37556551
http://dx.doi.org/10.1126/sciadv.adh5138
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author Weidemann, Douglas E.
Holehouse, James
Singh, Abhyudai
Grima, Ramon
Hauf, Silke
author_facet Weidemann, Douglas E.
Holehouse, James
Singh, Abhyudai
Grima, Ramon
Hauf, Silke
author_sort Weidemann, Douglas E.
collection PubMed
description Gene expression inherently gives rise to stochastic variation (“noise”) in the production of gene products. Minimizing noise is crucial for ensuring reliable cellular functions. However, noise cannot be suppressed below a certain intrinsic limit. For constitutively expressed genes, this limit is typically assumed to be Poissonian noise, wherein the variance in mRNA numbers is equal to their mean. Here, we demonstrate that several cell division genes in fission yeast exhibit mRNA variances significantly below this limit. The reduced variance can be explained by a gene expression model incorporating multiple transcription and mRNA degradation steps. Notably, in this sub-Poissonian regime, distinct from Poissonian or super-Poissonian regimes, cytoplasmic noise is effectively suppressed through a higher mRNA export rate. Our findings redefine the lower limit of eukaryotic gene expression noise and uncover molecular requirements for achieving ultralow noise, which is expected to be important for vital cellular functions.
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spelling pubmed-104119102023-08-10 The minimal intrinsic stochasticity of constitutively expressed eukaryotic genes is sub-Poissonian Weidemann, Douglas E. Holehouse, James Singh, Abhyudai Grima, Ramon Hauf, Silke Sci Adv Biomedicine and Life Sciences Gene expression inherently gives rise to stochastic variation (“noise”) in the production of gene products. Minimizing noise is crucial for ensuring reliable cellular functions. However, noise cannot be suppressed below a certain intrinsic limit. For constitutively expressed genes, this limit is typically assumed to be Poissonian noise, wherein the variance in mRNA numbers is equal to their mean. Here, we demonstrate that several cell division genes in fission yeast exhibit mRNA variances significantly below this limit. The reduced variance can be explained by a gene expression model incorporating multiple transcription and mRNA degradation steps. Notably, in this sub-Poissonian regime, distinct from Poissonian or super-Poissonian regimes, cytoplasmic noise is effectively suppressed through a higher mRNA export rate. Our findings redefine the lower limit of eukaryotic gene expression noise and uncover molecular requirements for achieving ultralow noise, which is expected to be important for vital cellular functions. American Association for the Advancement of Science 2023-08-09 /pmc/articles/PMC10411910/ /pubmed/37556551 http://dx.doi.org/10.1126/sciadv.adh5138 Text en Copyright © 2023 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY). https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution license (https://creativecommons.org/licenses/by/4.0/) , which permits which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Biomedicine and Life Sciences
Weidemann, Douglas E.
Holehouse, James
Singh, Abhyudai
Grima, Ramon
Hauf, Silke
The minimal intrinsic stochasticity of constitutively expressed eukaryotic genes is sub-Poissonian
title The minimal intrinsic stochasticity of constitutively expressed eukaryotic genes is sub-Poissonian
title_full The minimal intrinsic stochasticity of constitutively expressed eukaryotic genes is sub-Poissonian
title_fullStr The minimal intrinsic stochasticity of constitutively expressed eukaryotic genes is sub-Poissonian
title_full_unstemmed The minimal intrinsic stochasticity of constitutively expressed eukaryotic genes is sub-Poissonian
title_short The minimal intrinsic stochasticity of constitutively expressed eukaryotic genes is sub-Poissonian
title_sort minimal intrinsic stochasticity of constitutively expressed eukaryotic genes is sub-poissonian
topic Biomedicine and Life Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10411910/
https://www.ncbi.nlm.nih.gov/pubmed/37556551
http://dx.doi.org/10.1126/sciadv.adh5138
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