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Maast: genotyping thousands of microbial strains efficiently

Existing single nucleotide polymorphism (SNP) genotyping algorithms do not scale for species with thousands of sequenced strains, nor do they account for conspecific redundancy. Here we present a bioinformatics tool, Maast, which empowers population genetic meta-analysis of microbes at an unrivaled...

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Detalles Bibliográficos
Autores principales: Shi, Zhou Jason, Nayfach, Stephen, Pollard, Katherine S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10416524/
https://www.ncbi.nlm.nih.gov/pubmed/37563669
http://dx.doi.org/10.1186/s13059-023-03030-8