KOunt: a reproducible KEGG orthologue abundance workflow

SUMMARY: Accurate gene prediction is essential for successful metagenome analysis. We present KOunt, a Snakemake pipeline, that precisely quantifies KEGG orthologue abundance. AVAILABILITY AND IMPLEMENTATION: KOunt is available on GitHub: https://github.com/WatsonLab/KOunt. The KOunt reference datab...

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Detalles Bibliográficos
Autores principales: Mattock, Jennifer, Martínez-Álvaro, Marina, Cleveland, Matthew A, Roehe, Rainer, Watson, Mick
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10423021/
https://www.ncbi.nlm.nih.gov/pubmed/37535671
http://dx.doi.org/10.1093/bioinformatics/btad483

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10423021/
https://www.ncbi.nlm.nih.gov/pubmed/37535671
http://dx.doi.org/10.1093/bioinformatics/btad483

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