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A RAD51–ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination

ATP-dependent RAD51 recombinases play an essential role in eukaryotic homologous recombination by catalyzing a four-step process: 1) formation of a RAD51 single-filament assembly on ssDNA in the presence of ATP, 2) complementary DNA strand-exchange, 3) ATP hydrolysis transforming the RAD51 filament...

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Autores principales: Luo, Shih-Chi, Yeh, Min-Chi, Lien, Yu-Hsiang, Yeh, Hsin-Yi, Siao, Huei-Lun, Tu, I-Ping, Chi, Peter, Ho, Meng-Chiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10435448/
https://www.ncbi.nlm.nih.gov/pubmed/37591853
http://dx.doi.org/10.1038/s41467-023-40672-5
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author Luo, Shih-Chi
Yeh, Min-Chi
Lien, Yu-Hsiang
Yeh, Hsin-Yi
Siao, Huei-Lun
Tu, I-Ping
Chi, Peter
Ho, Meng-Chiao
author_facet Luo, Shih-Chi
Yeh, Min-Chi
Lien, Yu-Hsiang
Yeh, Hsin-Yi
Siao, Huei-Lun
Tu, I-Ping
Chi, Peter
Ho, Meng-Chiao
author_sort Luo, Shih-Chi
collection PubMed
description ATP-dependent RAD51 recombinases play an essential role in eukaryotic homologous recombination by catalyzing a four-step process: 1) formation of a RAD51 single-filament assembly on ssDNA in the presence of ATP, 2) complementary DNA strand-exchange, 3) ATP hydrolysis transforming the RAD51 filament into an ADP-bound disassembly-competent state, and 4) RAD51 disassembly to provide access for DNA repairing enzymes. Of these steps, filament dynamics between the ATP- and ADP-bound states, and the RAD51 disassembly mechanism, are poorly understood due to the lack of near-atomic-resolution information of the ADP-bound RAD51–DNA filament structure. We report the cryo-EM structure of ADP-bound RAD51–DNA filaments at 3.1 Å resolution, revealing a unique RAD51 double-filament that wraps around ssDNA. Structural analysis, supported by ATP-chase and time-resolved cryo-EM experiments, reveals a collapsing mechanism involving two four-protomer movements along ssDNA for mechanical transition between RAD51 single- and double-filament without RAD51 dissociation. This mechanism enables elastic change of RAD51 filament length during structural transitions between ATP- and ADP-states.
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spelling pubmed-104354482023-08-19 A RAD51–ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination Luo, Shih-Chi Yeh, Min-Chi Lien, Yu-Hsiang Yeh, Hsin-Yi Siao, Huei-Lun Tu, I-Ping Chi, Peter Ho, Meng-Chiao Nat Commun Article ATP-dependent RAD51 recombinases play an essential role in eukaryotic homologous recombination by catalyzing a four-step process: 1) formation of a RAD51 single-filament assembly on ssDNA in the presence of ATP, 2) complementary DNA strand-exchange, 3) ATP hydrolysis transforming the RAD51 filament into an ADP-bound disassembly-competent state, and 4) RAD51 disassembly to provide access for DNA repairing enzymes. Of these steps, filament dynamics between the ATP- and ADP-bound states, and the RAD51 disassembly mechanism, are poorly understood due to the lack of near-atomic-resolution information of the ADP-bound RAD51–DNA filament structure. We report the cryo-EM structure of ADP-bound RAD51–DNA filaments at 3.1 Å resolution, revealing a unique RAD51 double-filament that wraps around ssDNA. Structural analysis, supported by ATP-chase and time-resolved cryo-EM experiments, reveals a collapsing mechanism involving two four-protomer movements along ssDNA for mechanical transition between RAD51 single- and double-filament without RAD51 dissociation. This mechanism enables elastic change of RAD51 filament length during structural transitions between ATP- and ADP-states. Nature Publishing Group UK 2023-08-17 /pmc/articles/PMC10435448/ /pubmed/37591853 http://dx.doi.org/10.1038/s41467-023-40672-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Luo, Shih-Chi
Yeh, Min-Chi
Lien, Yu-Hsiang
Yeh, Hsin-Yi
Siao, Huei-Lun
Tu, I-Ping
Chi, Peter
Ho, Meng-Chiao
A RAD51–ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination
title A RAD51–ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination
title_full A RAD51–ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination
title_fullStr A RAD51–ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination
title_full_unstemmed A RAD51–ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination
title_short A RAD51–ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination
title_sort rad51–adp double filament structure unveils the mechanism of filament dynamics in homologous recombination
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10435448/
https://www.ncbi.nlm.nih.gov/pubmed/37591853
http://dx.doi.org/10.1038/s41467-023-40672-5
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