Seedability: optimizing alignment parameters for sensitive sequence comparison

MOTIVATION: Most sequence alignment techniques make use of exact k-mer hits, called seeds, as anchors to optimize alignment speed. A large number of bioinformatics tools employing seed-based alignment techniques, such as [Formula: see text] , use a single value of k per sequencing technology, withou...

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Detalles Bibliográficos
Autores principales: Ayad, Lorraine A K, Chikhi, Rayan, Pissis, Solon P
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Original Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10444664/
https://www.ncbi.nlm.nih.gov/pubmed/37621456
http://dx.doi.org/10.1093/bioadv/vbad108

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10444664/
https://www.ncbi.nlm.nih.gov/pubmed/37621456
http://dx.doi.org/10.1093/bioadv/vbad108

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