Block Aligner: an adaptive SIMD-accelerated aligner for sequences and position-specific scoring matrices

MOTIVATION: Efficiently aligning sequences is a fundamental problem in bioinformatics. Many recent algorithms for computing alignments through Smith–Waterman–Gotoh dynamic programming (DP) exploit Single Instruction Multiple Data (SIMD) operations on modern CPUs for speed. However, these advances ha...

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Detalles Bibliográficos
Autores principales: Liu, Daniel, Steinegger, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Original Paper
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10457662/
https://www.ncbi.nlm.nih.gov/pubmed/37535681
http://dx.doi.org/10.1093/bioinformatics/btad487

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10457662/
https://www.ncbi.nlm.nih.gov/pubmed/37535681
http://dx.doi.org/10.1093/bioinformatics/btad487

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