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Pathogenic mutation hotspots in protein kinase domain structure

Control of eukaryotic cellular function is heavily reliant on the phosphorylation of proteins at specific amino acid residues, such as serine, threonine, tyrosine, and histidine. Protein kinases that are responsible for this process comprise one of the largest families of evolutionarily related prot...

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Autores principales: Medvedev, Kirill E., Schaeffer, R. Dustin, Pei, Jimin, Grishin, Nick V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10464295/
https://www.ncbi.nlm.nih.gov/pubmed/37572333
http://dx.doi.org/10.1002/pro.4750
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author Medvedev, Kirill E.
Schaeffer, R. Dustin
Pei, Jimin
Grishin, Nick V.
author_facet Medvedev, Kirill E.
Schaeffer, R. Dustin
Pei, Jimin
Grishin, Nick V.
author_sort Medvedev, Kirill E.
collection PubMed
description Control of eukaryotic cellular function is heavily reliant on the phosphorylation of proteins at specific amino acid residues, such as serine, threonine, tyrosine, and histidine. Protein kinases that are responsible for this process comprise one of the largest families of evolutionarily related proteins. Dysregulation of protein kinase signaling pathways is a frequent cause of a large variety of human diseases including cancer, autoimmune, neurodegenerative, and cardiovascular disorders. In this study, we mapped all pathogenic mutations in 497 human protein kinase domains from the ClinVar database to the reference structure of Aurora kinase A (AURKA) and grouped them by the relevance to the disease type. Our study revealed that the majority of mutation hotspots associated with cancer are situated within the catalytic and activation loops of the kinase domain, whereas non‐cancer‐related hotspots tend to be located outside of these regions. Additionally, we identified a hotspot at residue R371 of the AURKA structure that has the highest number of exclusively non‐cancer‐related pathogenic mutations (21) and has not been previously discussed.
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spelling pubmed-104642952023-09-01 Pathogenic mutation hotspots in protein kinase domain structure Medvedev, Kirill E. Schaeffer, R. Dustin Pei, Jimin Grishin, Nick V. Protein Sci Research Note Control of eukaryotic cellular function is heavily reliant on the phosphorylation of proteins at specific amino acid residues, such as serine, threonine, tyrosine, and histidine. Protein kinases that are responsible for this process comprise one of the largest families of evolutionarily related proteins. Dysregulation of protein kinase signaling pathways is a frequent cause of a large variety of human diseases including cancer, autoimmune, neurodegenerative, and cardiovascular disorders. In this study, we mapped all pathogenic mutations in 497 human protein kinase domains from the ClinVar database to the reference structure of Aurora kinase A (AURKA) and grouped them by the relevance to the disease type. Our study revealed that the majority of mutation hotspots associated with cancer are situated within the catalytic and activation loops of the kinase domain, whereas non‐cancer‐related hotspots tend to be located outside of these regions. Additionally, we identified a hotspot at residue R371 of the AURKA structure that has the highest number of exclusively non‐cancer‐related pathogenic mutations (21) and has not been previously discussed. John Wiley & Sons, Inc. 2023-09-01 /pmc/articles/PMC10464295/ /pubmed/37572333 http://dx.doi.org/10.1002/pro.4750 Text en © 2023 The Authors. Protein Science published by Wiley Periodicals LLC on behalf of The Protein Society. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Note
Medvedev, Kirill E.
Schaeffer, R. Dustin
Pei, Jimin
Grishin, Nick V.
Pathogenic mutation hotspots in protein kinase domain structure
title Pathogenic mutation hotspots in protein kinase domain structure
title_full Pathogenic mutation hotspots in protein kinase domain structure
title_fullStr Pathogenic mutation hotspots in protein kinase domain structure
title_full_unstemmed Pathogenic mutation hotspots in protein kinase domain structure
title_short Pathogenic mutation hotspots in protein kinase domain structure
title_sort pathogenic mutation hotspots in protein kinase domain structure
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10464295/
https://www.ncbi.nlm.nih.gov/pubmed/37572333
http://dx.doi.org/10.1002/pro.4750
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