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De Novo Design of κ-Opioid Receptor Antagonists Using a Generative Deep-Learning Framework

[Image: see text] Likely effective pharmacological interventions for the treatment of opioid addiction include attempts to attenuate brain reward deficits during periods of abstinence. Pharmacological blockade of the κ-opioid receptor (KOR) has been shown to abolish brain reward deficits in rodents...

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Autores principales: Salas-Estrada, Leslie, Provasi, Davide, Qiu, Xing, Kaniskan, Husnu Ümit, Huang, Xi-Ping, DiBerto, Jeffrey F., Lamim Ribeiro, João Marcelo, Jin, Jian, Roth, Bryan L., Filizola, Marta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10466374/
https://www.ncbi.nlm.nih.gov/pubmed/37555591
http://dx.doi.org/10.1021/acs.jcim.3c00651
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author Salas-Estrada, Leslie
Provasi, Davide
Qiu, Xing
Kaniskan, Husnu Ümit
Huang, Xi-Ping
DiBerto, Jeffrey F.
Lamim Ribeiro, João Marcelo
Jin, Jian
Roth, Bryan L.
Filizola, Marta
author_facet Salas-Estrada, Leslie
Provasi, Davide
Qiu, Xing
Kaniskan, Husnu Ümit
Huang, Xi-Ping
DiBerto, Jeffrey F.
Lamim Ribeiro, João Marcelo
Jin, Jian
Roth, Bryan L.
Filizola, Marta
author_sort Salas-Estrada, Leslie
collection PubMed
description [Image: see text] Likely effective pharmacological interventions for the treatment of opioid addiction include attempts to attenuate brain reward deficits during periods of abstinence. Pharmacological blockade of the κ-opioid receptor (KOR) has been shown to abolish brain reward deficits in rodents during withdrawal, as well as to reduce the escalation of opioid use in rats with extended access to opioids. Although KOR antagonists represent promising candidates for the treatment of opioid addiction, very few potent selective KOR antagonists are known to date and most of them exhibit significant safety concerns. Here, we used a generative deep-learning framework for the de novo design of chemotypes with putative KOR antagonistic activity. Molecules generated by models trained with this framework were prioritized for chemical synthesis based on their predicted optimal interactions with the receptor. Our models and proposed training protocol were experimentally validated by binding and functional assays.
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spelling pubmed-104663742023-08-31 De Novo Design of κ-Opioid Receptor Antagonists Using a Generative Deep-Learning Framework Salas-Estrada, Leslie Provasi, Davide Qiu, Xing Kaniskan, Husnu Ümit Huang, Xi-Ping DiBerto, Jeffrey F. Lamim Ribeiro, João Marcelo Jin, Jian Roth, Bryan L. Filizola, Marta J Chem Inf Model [Image: see text] Likely effective pharmacological interventions for the treatment of opioid addiction include attempts to attenuate brain reward deficits during periods of abstinence. Pharmacological blockade of the κ-opioid receptor (KOR) has been shown to abolish brain reward deficits in rodents during withdrawal, as well as to reduce the escalation of opioid use in rats with extended access to opioids. Although KOR antagonists represent promising candidates for the treatment of opioid addiction, very few potent selective KOR antagonists are known to date and most of them exhibit significant safety concerns. Here, we used a generative deep-learning framework for the de novo design of chemotypes with putative KOR antagonistic activity. Molecules generated by models trained with this framework were prioritized for chemical synthesis based on their predicted optimal interactions with the receptor. Our models and proposed training protocol were experimentally validated by binding and functional assays. American Chemical Society 2023-08-09 /pmc/articles/PMC10466374/ /pubmed/37555591 http://dx.doi.org/10.1021/acs.jcim.3c00651 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Salas-Estrada, Leslie
Provasi, Davide
Qiu, Xing
Kaniskan, Husnu Ümit
Huang, Xi-Ping
DiBerto, Jeffrey F.
Lamim Ribeiro, João Marcelo
Jin, Jian
Roth, Bryan L.
Filizola, Marta
De Novo Design of κ-Opioid Receptor Antagonists Using a Generative Deep-Learning Framework
title De Novo Design of κ-Opioid Receptor Antagonists Using a Generative Deep-Learning Framework
title_full De Novo Design of κ-Opioid Receptor Antagonists Using a Generative Deep-Learning Framework
title_fullStr De Novo Design of κ-Opioid Receptor Antagonists Using a Generative Deep-Learning Framework
title_full_unstemmed De Novo Design of κ-Opioid Receptor Antagonists Using a Generative Deep-Learning Framework
title_short De Novo Design of κ-Opioid Receptor Antagonists Using a Generative Deep-Learning Framework
title_sort de novo design of κ-opioid receptor antagonists using a generative deep-learning framework
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10466374/
https://www.ncbi.nlm.nih.gov/pubmed/37555591
http://dx.doi.org/10.1021/acs.jcim.3c00651
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