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The measurement of true initial rates is not always absolutely necessary to estimate enzyme kinetic parameters

In the chapters dealing with enzyme reactions, the authors of all Biochemistry textbooks and of even more specialized texts consider that the characteristic parameters (k(cat) and K(m)) must be determined under initial or steady-state rate conditions. This implies the transformation of a very limite...

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Autores principales: Frère, Jean-Marie, Verlaine, Olivier, Matagne, André
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10497622/
https://www.ncbi.nlm.nih.gov/pubmed/37699921
http://dx.doi.org/10.1038/s41598-023-41805-y
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author Frère, Jean-Marie
Verlaine, Olivier
Matagne, André
author_facet Frère, Jean-Marie
Verlaine, Olivier
Matagne, André
author_sort Frère, Jean-Marie
collection PubMed
description In the chapters dealing with enzyme reactions, the authors of all Biochemistry textbooks and of even more specialized texts consider that the characteristic parameters (k(cat) and K(m)) must be determined under initial or steady-state rate conditions. This implies the transformation of a very limited proportion of substrate (at most 10–20%) or a continuous recording of the product or substrate concentration vs. time. Both options can present practical difficulties. Is it possible to get around these very stringent conditions? Here we show that in the most favourable cases up  to 70% of the substrate can be converted resulting in systematic errors on the parameters (that can easily be taken account of) if the simple Henri-Michaelis–Menten equation is utilised. Alternatively, the integrated form of the same equation directly yields excellent estimates of the same parameters. Our observations should greatly facilitate the task of researchers who study systems in which measurements of the reaction progress are painstaking or when substrate concentrations close to the detection limit must be used. The general conclusion is that it is not always absolutely necessary to determine initial or steady-state rates to obtain reliable estimations of the enzyme kinetic parameters..
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spelling pubmed-104976222023-09-14 The measurement of true initial rates is not always absolutely necessary to estimate enzyme kinetic parameters Frère, Jean-Marie Verlaine, Olivier Matagne, André Sci Rep Article In the chapters dealing with enzyme reactions, the authors of all Biochemistry textbooks and of even more specialized texts consider that the characteristic parameters (k(cat) and K(m)) must be determined under initial or steady-state rate conditions. This implies the transformation of a very limited proportion of substrate (at most 10–20%) or a continuous recording of the product or substrate concentration vs. time. Both options can present practical difficulties. Is it possible to get around these very stringent conditions? Here we show that in the most favourable cases up  to 70% of the substrate can be converted resulting in systematic errors on the parameters (that can easily be taken account of) if the simple Henri-Michaelis–Menten equation is utilised. Alternatively, the integrated form of the same equation directly yields excellent estimates of the same parameters. Our observations should greatly facilitate the task of researchers who study systems in which measurements of the reaction progress are painstaking or when substrate concentrations close to the detection limit must be used. The general conclusion is that it is not always absolutely necessary to determine initial or steady-state rates to obtain reliable estimations of the enzyme kinetic parameters.. Nature Publishing Group UK 2023-09-12 /pmc/articles/PMC10497622/ /pubmed/37699921 http://dx.doi.org/10.1038/s41598-023-41805-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Frère, Jean-Marie
Verlaine, Olivier
Matagne, André
The measurement of true initial rates is not always absolutely necessary to estimate enzyme kinetic parameters
title The measurement of true initial rates is not always absolutely necessary to estimate enzyme kinetic parameters
title_full The measurement of true initial rates is not always absolutely necessary to estimate enzyme kinetic parameters
title_fullStr The measurement of true initial rates is not always absolutely necessary to estimate enzyme kinetic parameters
title_full_unstemmed The measurement of true initial rates is not always absolutely necessary to estimate enzyme kinetic parameters
title_short The measurement of true initial rates is not always absolutely necessary to estimate enzyme kinetic parameters
title_sort measurement of true initial rates is not always absolutely necessary to estimate enzyme kinetic parameters
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10497622/
https://www.ncbi.nlm.nih.gov/pubmed/37699921
http://dx.doi.org/10.1038/s41598-023-41805-y
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