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Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers

Cucurbit[7]uril (CB[7]) encapsulates adamantyl and trimethylsilyl substituents of positively charged guests in dimethyl sulfoxide (DMSO). Unlike in water or deuterium oxide, addition of a selection of alkali and alkali-earth cations with van der Waals radii between 1.0 and 1.4 Å (Na(+), K(+), Ca(2+)...

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Autores principales: Lončarić, Doroteja, Movahedifar, Fahimeh, Štoček, Jakub Radek, Dračínský, Martin, Cvačka, Josef, Guan, Shanshan, Bythell, Benjamin J., Císařová, Ivana, Masson, Eric, Kaleta, Jiří
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10498720/
https://www.ncbi.nlm.nih.gov/pubmed/37712024
http://dx.doi.org/10.1039/d3sc02032k
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author Lončarić, Doroteja
Movahedifar, Fahimeh
Štoček, Jakub Radek
Dračínský, Martin
Cvačka, Josef
Guan, Shanshan
Bythell, Benjamin J.
Císařová, Ivana
Masson, Eric
Kaleta, Jiří
author_facet Lončarić, Doroteja
Movahedifar, Fahimeh
Štoček, Jakub Radek
Dračínský, Martin
Cvačka, Josef
Guan, Shanshan
Bythell, Benjamin J.
Císařová, Ivana
Masson, Eric
Kaleta, Jiří
author_sort Lončarić, Doroteja
collection PubMed
description Cucurbit[7]uril (CB[7]) encapsulates adamantyl and trimethylsilyl substituents of positively charged guests in dimethyl sulfoxide (DMSO). Unlike in water or deuterium oxide, addition of a selection of alkali and alkali-earth cations with van der Waals radii between 1.0 and 1.4 Å (Na(+), K(+), Ca(2+), Sr(2+), Ba(2+) and Eu(3+)) to the CB[7]/guest complexes triggers their cation-mediated trimerization, a process that is very slow on the nuclear magnetic resonance (NMR) time scale. Smaller (Li(+), Mg(2+)) or larger cations (Rb(+), Cs(+) or NH(4)(+)) are inert. The trimers display extensive CH–O interactions between the equatorial and pseudo-equatorial hydrogens of CB[7] and the carbonyl rim of the neighboring CB[7] unit in the trimer, and a deeply nested cation between the three interacting carbonylated CB[7] rims; a counteranion is likely perched in the shallow cavity formed by the three outer walls of CB[7] in the trimer. Remarkably, a guest must occupy the cavity of CB[7] for trimerization to take place. Using a combination of semi-empirical and density functional theory techniques in conjunction with continuum solvation models, we showed that trimerization is favored in DMSO, and not in water, because the penalty for the partial desolvation of three of the six CB[7] portals upon aggregation into a trimer is less unfavorable in DMSO compared to water.
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spelling pubmed-104987202023-09-14 Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers Lončarić, Doroteja Movahedifar, Fahimeh Štoček, Jakub Radek Dračínský, Martin Cvačka, Josef Guan, Shanshan Bythell, Benjamin J. Císařová, Ivana Masson, Eric Kaleta, Jiří Chem Sci Chemistry Cucurbit[7]uril (CB[7]) encapsulates adamantyl and trimethylsilyl substituents of positively charged guests in dimethyl sulfoxide (DMSO). Unlike in water or deuterium oxide, addition of a selection of alkali and alkali-earth cations with van der Waals radii between 1.0 and 1.4 Å (Na(+), K(+), Ca(2+), Sr(2+), Ba(2+) and Eu(3+)) to the CB[7]/guest complexes triggers their cation-mediated trimerization, a process that is very slow on the nuclear magnetic resonance (NMR) time scale. Smaller (Li(+), Mg(2+)) or larger cations (Rb(+), Cs(+) or NH(4)(+)) are inert. The trimers display extensive CH–O interactions between the equatorial and pseudo-equatorial hydrogens of CB[7] and the carbonyl rim of the neighboring CB[7] unit in the trimer, and a deeply nested cation between the three interacting carbonylated CB[7] rims; a counteranion is likely perched in the shallow cavity formed by the three outer walls of CB[7] in the trimer. Remarkably, a guest must occupy the cavity of CB[7] for trimerization to take place. Using a combination of semi-empirical and density functional theory techniques in conjunction with continuum solvation models, we showed that trimerization is favored in DMSO, and not in water, because the penalty for the partial desolvation of three of the six CB[7] portals upon aggregation into a trimer is less unfavorable in DMSO compared to water. The Royal Society of Chemistry 2023-08-15 /pmc/articles/PMC10498720/ /pubmed/37712024 http://dx.doi.org/10.1039/d3sc02032k Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/
spellingShingle Chemistry
Lončarić, Doroteja
Movahedifar, Fahimeh
Štoček, Jakub Radek
Dračínský, Martin
Cvačka, Josef
Guan, Shanshan
Bythell, Benjamin J.
Císařová, Ivana
Masson, Eric
Kaleta, Jiří
Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers
title Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers
title_full Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers
title_fullStr Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers
title_full_unstemmed Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers
title_short Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers
title_sort solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10498720/
https://www.ncbi.nlm.nih.gov/pubmed/37712024
http://dx.doi.org/10.1039/d3sc02032k
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