Cargando…
Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers
Cucurbit[7]uril (CB[7]) encapsulates adamantyl and trimethylsilyl substituents of positively charged guests in dimethyl sulfoxide (DMSO). Unlike in water or deuterium oxide, addition of a selection of alkali and alkali-earth cations with van der Waals radii between 1.0 and 1.4 Å (Na(+), K(+), Ca(2+)...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society of Chemistry
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10498720/ https://www.ncbi.nlm.nih.gov/pubmed/37712024 http://dx.doi.org/10.1039/d3sc02032k |
_version_ | 1785105585533878272 |
---|---|
author | Lončarić, Doroteja Movahedifar, Fahimeh Štoček, Jakub Radek Dračínský, Martin Cvačka, Josef Guan, Shanshan Bythell, Benjamin J. Císařová, Ivana Masson, Eric Kaleta, Jiří |
author_facet | Lončarić, Doroteja Movahedifar, Fahimeh Štoček, Jakub Radek Dračínský, Martin Cvačka, Josef Guan, Shanshan Bythell, Benjamin J. Císařová, Ivana Masson, Eric Kaleta, Jiří |
author_sort | Lončarić, Doroteja |
collection | PubMed |
description | Cucurbit[7]uril (CB[7]) encapsulates adamantyl and trimethylsilyl substituents of positively charged guests in dimethyl sulfoxide (DMSO). Unlike in water or deuterium oxide, addition of a selection of alkali and alkali-earth cations with van der Waals radii between 1.0 and 1.4 Å (Na(+), K(+), Ca(2+), Sr(2+), Ba(2+) and Eu(3+)) to the CB[7]/guest complexes triggers their cation-mediated trimerization, a process that is very slow on the nuclear magnetic resonance (NMR) time scale. Smaller (Li(+), Mg(2+)) or larger cations (Rb(+), Cs(+) or NH(4)(+)) are inert. The trimers display extensive CH–O interactions between the equatorial and pseudo-equatorial hydrogens of CB[7] and the carbonyl rim of the neighboring CB[7] unit in the trimer, and a deeply nested cation between the three interacting carbonylated CB[7] rims; a counteranion is likely perched in the shallow cavity formed by the three outer walls of CB[7] in the trimer. Remarkably, a guest must occupy the cavity of CB[7] for trimerization to take place. Using a combination of semi-empirical and density functional theory techniques in conjunction with continuum solvation models, we showed that trimerization is favored in DMSO, and not in water, because the penalty for the partial desolvation of three of the six CB[7] portals upon aggregation into a trimer is less unfavorable in DMSO compared to water. |
format | Online Article Text |
id | pubmed-10498720 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | The Royal Society of Chemistry |
record_format | MEDLINE/PubMed |
spelling | pubmed-104987202023-09-14 Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers Lončarić, Doroteja Movahedifar, Fahimeh Štoček, Jakub Radek Dračínský, Martin Cvačka, Josef Guan, Shanshan Bythell, Benjamin J. Císařová, Ivana Masson, Eric Kaleta, Jiří Chem Sci Chemistry Cucurbit[7]uril (CB[7]) encapsulates adamantyl and trimethylsilyl substituents of positively charged guests in dimethyl sulfoxide (DMSO). Unlike in water or deuterium oxide, addition of a selection of alkali and alkali-earth cations with van der Waals radii between 1.0 and 1.4 Å (Na(+), K(+), Ca(2+), Sr(2+), Ba(2+) and Eu(3+)) to the CB[7]/guest complexes triggers their cation-mediated trimerization, a process that is very slow on the nuclear magnetic resonance (NMR) time scale. Smaller (Li(+), Mg(2+)) or larger cations (Rb(+), Cs(+) or NH(4)(+)) are inert. The trimers display extensive CH–O interactions between the equatorial and pseudo-equatorial hydrogens of CB[7] and the carbonyl rim of the neighboring CB[7] unit in the trimer, and a deeply nested cation between the three interacting carbonylated CB[7] rims; a counteranion is likely perched in the shallow cavity formed by the three outer walls of CB[7] in the trimer. Remarkably, a guest must occupy the cavity of CB[7] for trimerization to take place. Using a combination of semi-empirical and density functional theory techniques in conjunction with continuum solvation models, we showed that trimerization is favored in DMSO, and not in water, because the penalty for the partial desolvation of three of the six CB[7] portals upon aggregation into a trimer is less unfavorable in DMSO compared to water. The Royal Society of Chemistry 2023-08-15 /pmc/articles/PMC10498720/ /pubmed/37712024 http://dx.doi.org/10.1039/d3sc02032k Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/ |
spellingShingle | Chemistry Lončarić, Doroteja Movahedifar, Fahimeh Štoček, Jakub Radek Dračínský, Martin Cvačka, Josef Guan, Shanshan Bythell, Benjamin J. Císařová, Ivana Masson, Eric Kaleta, Jiří Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers |
title | Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers |
title_full | Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers |
title_fullStr | Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers |
title_full_unstemmed | Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers |
title_short | Solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers |
title_sort | solvent-controlled formation of alkali and alkali-earth-secured cucurbituril/guest trimers |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10498720/ https://www.ncbi.nlm.nih.gov/pubmed/37712024 http://dx.doi.org/10.1039/d3sc02032k |
work_keys_str_mv | AT loncaricdoroteja solventcontrolledformationofalkaliandalkaliearthsecuredcucurbiturilguesttrimers AT movahedifarfahimeh solventcontrolledformationofalkaliandalkaliearthsecuredcucurbiturilguesttrimers AT stocekjakubradek solventcontrolledformationofalkaliandalkaliearthsecuredcucurbiturilguesttrimers AT dracinskymartin solventcontrolledformationofalkaliandalkaliearthsecuredcucurbiturilguesttrimers AT cvackajosef solventcontrolledformationofalkaliandalkaliearthsecuredcucurbiturilguesttrimers AT guanshanshan solventcontrolledformationofalkaliandalkaliearthsecuredcucurbiturilguesttrimers AT bythellbenjaminj solventcontrolledformationofalkaliandalkaliearthsecuredcucurbiturilguesttrimers AT cisarovaivana solventcontrolledformationofalkaliandalkaliearthsecuredcucurbiturilguesttrimers AT massoneric solventcontrolledformationofalkaliandalkaliearthsecuredcucurbiturilguesttrimers AT kaletajiri solventcontrolledformationofalkaliandalkaliearthsecuredcucurbiturilguesttrimers |