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Efficient Empirical Valence Bond Simulations with GROMACS

[Image: see text] We describe a protocol to perform empirical valence bond (EVB) simulations using GROMACS software. EVB is a fast and reliable method that allows one to determine the reaction free-energy profiles in complex systems, such as enzymes, by employing classical force fields to represent...

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Detalles Bibliográficos
Autores principales: Oanca, Gabriel, van der Ent, Florian, Åqvist, Johan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10500987/
https://www.ncbi.nlm.nih.gov/pubmed/37623818
http://dx.doi.org/10.1021/acs.jctc.3c00714