Cargando…

Genome-wide promoter responses to CRISPR perturbations of regulators reveal regulatory networks in Escherichia coli

Elucidating genome-scale regulatory networks requires a comprehensive collection of gene expression profiles, yet measuring gene expression responses for every transcription factor (TF)-gene pair in living prokaryotic cells remains challenging. Here, we develop pooled promoter responses to TF pertur...

Descripción completa

Detalles Bibliográficos
Autores principales:	Han, Yichao, Li, Wanji, Filko, Alden, Li, Jingyao, Zhang, Fuzhong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10505187/ https://www.ncbi.nlm.nih.gov/pubmed/37717013 http://dx.doi.org/10.1038/s41467-023-41572-4

Ejemplares similares

Decoding genome-wide GadEWX-transcriptional regulatory networks reveals multifaceted cellular responses to acid stress in Escherichia coli
por: Seo, Sang Woo, et al.
Publicado: (2015)

CRISPR-Cas adaptation in Escherichia coli
por: Mitić, Damjan, et al.
Publicado: (2023)

Functional organisation of Escherichia coli transcriptional regulatory network
por: Martínez-Antonio, Agustino, et al.
Publicado: (2008)

Comprehensive Mapping of the Escherichia coli Flagellar Regulatory Network
por: Fitzgerald, Devon M., et al.
Publicado: (2014)

Genome-Wide PhoB Binding and Gene Expression Profiles Reveal the Hierarchical Gene Regulatory Network of Phosphate Starvation in Escherichia coli
por: Yang, Chi, et al.
Publicado: (2012)

Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli
por: Gutierrez-Ríos, Rosa María, et al.
Publicado: (2007)

Patterns of Subnet Usage Reveal Distinct Scales of Regulation in the Transcriptional Regulatory Network of Escherichia coli
por: Marr, Carsten, et al.
Publicado: (2010)

CRISPR/Cas Technologies and Their Applications in Escherichia coli
por: Dong, Huina, et al.
Publicado: (2021)

Dynamic mechanisms of CRISPR interference by Escherichia coli CRISPR-Cas3
por: Yoshimi, Kazuto, et al.
Publicado: (2022)

Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network
por: Dobrin, Radu, et al.
Publicado: (2004)

The comprehensive updated regulatory network of Escherichia coli K-12
por: Salgado, Heladia, et al.
Publicado: (2006)

Correction: Comprehensive Mapping of the Escherichia coli Flagellar Regulatory Network
Publicado: (2014)

Correction: Comprehensive Mapping of the Escherichia coli Flagellar Regulatory Network
por: Fitzgerald, Devon M., et al.
Publicado: (2015)

Metabolic Perturbations Caused by the Over-Expression of mcr-1 in Escherichia coli
por: Liu, Yi-Yun, et al.
Publicado: (2020)

A CRISPR-based chromosomal-separation technique for Escherichia coli
por: Su, Junchang, et al.
Publicado: (2022)

Genome-wide gene expression noise in Escherichia coli is condition-dependent and determined by propagation of noise through the regulatory network
por: Urchueguía, Arantxa, et al.
Publicado: (2021)

CRISPR-Cas Functional Module Exchange in Escherichia coli
por: Almendros, Cristóbal, et al.
Publicado: (2014)

CRISPR Content Correlates with the Pathogenic Potential of Escherichia coli
por: García-Gutiérrez, Enriqueta, et al.
Publicado: (2015)

The Influence of Promoter Architectures and Regulatory Motifs on Gene Expression in Escherichia coli
por: Rydenfelt, Mattias, et al.
Publicado: (2014)

Coordination logic of the sensing machinery in the transcriptional regulatory network of Escherichia coli
por: Janga, Sarath Chandra, et al.
Publicado: (2007)

Artificial Diploid Escherichia coli by a CRISPR Chromosome‐Doubling Technique
por: Wang, Pengju, et al.
Publicado: (2023)

Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach
por: Ma, Hong-Wu, et al.
Publicado: (2004)

Synthetic Genetic Interactions Reveal a Dense and Cryptic Regulatory Network of Small Noncoding RNAs in Escherichia coli
por: Rachwalski, Kenneth, et al.
Publicado: (2022)

Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation
por: Qi, Fei, et al.
Publicado: (2018)

The Genome-Wide Interaction Network of Nutrient Stress Genes in Escherichia coli
por: Côté, Jean-Philippe, et al.
Publicado: (2016)

A predictor for predicting Escherichia coli transcriptome and the effects of gene perturbations
por: Ling, Maurice HT, et al.
Publicado: (2014)

Correction: The Influence of Promoter Architectures and Regulatory Motifs on Gene Expression in Escherichia coli
Publicado: (2015)

Deciphering the regulatory genome of Escherichia coli, one hundred promoters at a time
por: Ireland, William T, et al.
Publicado: (2020)

Correction: CRISPR Content Correlates with the Pathogenic Potential of Escherichia coli
Publicado: (2015)

Resensitization of Fosfomycin-Resistant Escherichia coli Using the CRISPR System
por: Walflor, Haniel Siqueira Mortagua, et al.
Publicado: (2022)

Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations
por: Zare, Hossein, et al.
Publicado: (2009)

Genome-wide association reveals host-specific genomic traits in Escherichia coli
por: Tiwari, Sumeet K., et al.
Publicado: (2023)

Bi-terminal fusion of intrinsically-disordered mussel foot protein fragments boosts mechanical strength for protein fibers
por: Li, Jingyao, et al.
Publicado: (2023)

Regulatory mechanisms of lipopolysaccharide synthesis in Escherichia coli
por: Shu, Sheng, et al.
Publicado: (2022)

A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia coli
por: Silander, Olin K., et al.
Publicado: (2012)

Characterization of Bacterial Transcriptional Regulatory Networks in Escherichia coli through Genome-Wide In Vitro Run-Off Transcription/RNA-seq (ROSE)
por: Schmidt, Pascal, et al.
Publicado: (2023)

Network perturbation by recurrent regulatory variants in cancer
por: Jang, Kiwon, et al.
Publicado: (2017)

Genotyping Based on CRISPR Loci Diversity and Pathogenic Potential of Diarrheagenic Escherichia coli
por: Bai, Zhiye, et al.
Publicado: (2022)

A system-wide network reconstruction of gene regulation and metabolism in Escherichia coli
por: Grimbs, Anne, et al.
Publicado: (2019)

Metabolic perturbations in mutants of glucose transporters and their applications in metabolite production in Escherichia coli
por: Jung, Hwi-Min, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_gm8c16fr1ltr4j0udus911br4t