epiAneufinder identifies copy number alterations from single-cell ATAC-seq data

Single-cell open chromatin profiling via scATAC-seq has become a mainstream measurement of open chromatin in single-cells. Here we present epiAneufinder, an algorithm that exploits the read count information from scATAC-seq data to extract genome-wide copy number alterations (CNAs) for individual ce...

Descripción completa

Detalles Bibliográficos
Autores principales: Ramakrishnan, Akshaya, Symeonidi, Aikaterini, Hanel, Patrick, Schmid, Katharina T., Richter, Maria L., Schubert, Michael, Colomé-Tatché, Maria
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10511508/
https://www.ncbi.nlm.nih.gov/pubmed/37730813
http://dx.doi.org/10.1038/s41467-023-41076-1

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10511508/
https://www.ncbi.nlm.nih.gov/pubmed/37730813
http://dx.doi.org/10.1038/s41467-023-41076-1

Ejemplares similares