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Allo: Accurate allocation of multi-mapped reads enables regulatory element analysis at repeats

Transposable elements (TEs) and other repetitive regions have been shown to contain gene regulatory elements, including transcription factor binding sites. Unfortunately, regulatory elements harbored by repeats have proven difficult to characterize using short-read sequencing assays such as ChIP-seq...

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Detalles Bibliográficos
Autores principales: Morrissey, Alexis, Shi, Jeffrey, James, Daniela Q., Mahony, Shaun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10515862/
https://www.ncbi.nlm.nih.gov/pubmed/37745557
http://dx.doi.org/10.1101/2023.09.12.556916