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Refine and Strengthen SAR-Based Read-Across by Considering Bioactivation and Modes of Action
[Image: see text] Structure–activity relationship (SAR)-based read-across is an important and effective method to establish the safety of a data-poor target chemical (structure of interest (SOI)) using hazard data from structurally similar source chemicals (analogues). Many methods use quantitative...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10523590/ https://www.ncbi.nlm.nih.gov/pubmed/37594911 http://dx.doi.org/10.1021/acs.chemrestox.3c00156 |
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author | Yan, Gang Rose, Jane Ellison, Corie Mudd, Ashley M. Zhang, Xiaoling Wu, Shengde |
author_facet | Yan, Gang Rose, Jane Ellison, Corie Mudd, Ashley M. Zhang, Xiaoling Wu, Shengde |
author_sort | Yan, Gang |
collection | PubMed |
description | [Image: see text] Structure–activity relationship (SAR)-based read-across is an important and effective method to establish the safety of a data-poor target chemical (structure of interest (SOI)) using hazard data from structurally similar source chemicals (analogues). Many methods use quantitative similarity scores to evaluate the structural similarity for searching and selecting analogues as well as for evaluating analogue suitability. However, studies suggest that read-across based purely on structural similarity cannot accurately predict the toxicity of an SOI. As mechanistic data become available, we gain a greater understanding of the mode of action (MOA), the relationship between structures and metabolism/bioactivation pathways, and the existence of “activity cliffs” in chemical chain length, which can improve the analogue rating process. For this purpose, the current work identifies a series of classes of chemicals where a small change at a key position can result in a significant change in metabolism and bioactivation pathways and may eventually result in significant changes in chemical toxicity that have a big impact on the suitability of analogues for read-across. Additionally, a series of SAR-based read-across case studies are presented, which cover a variety of chemical classes that commonly link to different toxic endpoints. The case study results indicate that SAR-based read-across can be refined and strengthened by considering MOAs or proposed reactive metabolite formation pathways, which can improve the overall accuracy, consistency, transparency, and confidence in evaluating analogue suitability. |
format | Online Article Text |
id | pubmed-10523590 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-105235902023-09-28 Refine and Strengthen SAR-Based Read-Across by Considering Bioactivation and Modes of Action Yan, Gang Rose, Jane Ellison, Corie Mudd, Ashley M. Zhang, Xiaoling Wu, Shengde Chem Res Toxicol [Image: see text] Structure–activity relationship (SAR)-based read-across is an important and effective method to establish the safety of a data-poor target chemical (structure of interest (SOI)) using hazard data from structurally similar source chemicals (analogues). Many methods use quantitative similarity scores to evaluate the structural similarity for searching and selecting analogues as well as for evaluating analogue suitability. However, studies suggest that read-across based purely on structural similarity cannot accurately predict the toxicity of an SOI. As mechanistic data become available, we gain a greater understanding of the mode of action (MOA), the relationship between structures and metabolism/bioactivation pathways, and the existence of “activity cliffs” in chemical chain length, which can improve the analogue rating process. For this purpose, the current work identifies a series of classes of chemicals where a small change at a key position can result in a significant change in metabolism and bioactivation pathways and may eventually result in significant changes in chemical toxicity that have a big impact on the suitability of analogues for read-across. Additionally, a series of SAR-based read-across case studies are presented, which cover a variety of chemical classes that commonly link to different toxic endpoints. The case study results indicate that SAR-based read-across can be refined and strengthened by considering MOAs or proposed reactive metabolite formation pathways, which can improve the overall accuracy, consistency, transparency, and confidence in evaluating analogue suitability. American Chemical Society 2023-08-18 /pmc/articles/PMC10523590/ /pubmed/37594911 http://dx.doi.org/10.1021/acs.chemrestox.3c00156 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Yan, Gang Rose, Jane Ellison, Corie Mudd, Ashley M. Zhang, Xiaoling Wu, Shengde Refine and Strengthen SAR-Based Read-Across by Considering Bioactivation and Modes of Action |
title | Refine and
Strengthen SAR-Based Read-Across by Considering
Bioactivation and Modes of Action |
title_full | Refine and
Strengthen SAR-Based Read-Across by Considering
Bioactivation and Modes of Action |
title_fullStr | Refine and
Strengthen SAR-Based Read-Across by Considering
Bioactivation and Modes of Action |
title_full_unstemmed | Refine and
Strengthen SAR-Based Read-Across by Considering
Bioactivation and Modes of Action |
title_short | Refine and
Strengthen SAR-Based Read-Across by Considering
Bioactivation and Modes of Action |
title_sort | refine and
strengthen sar-based read-across by considering
bioactivation and modes of action |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10523590/ https://www.ncbi.nlm.nih.gov/pubmed/37594911 http://dx.doi.org/10.1021/acs.chemrestox.3c00156 |
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