Cargando…
Efficient mapping of accurate long reads in minimizer space with mapquik
DNA sequencing data continue to progress toward longer reads with increasingly lower sequencing error rates. We focus on the critical problem of mapping, or aligning, low-divergence sequences from long reads (e.g., Pacific Biosciences [PacBio] HiFi) to a reference genome, which poses challenges in t...
Autores principales: | Ekim, Bariş, Sahlin, Kristoffer, Medvedev, Paul, Berger, Bonnie, Chikhi, Rayan |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory Press
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10538364/ https://www.ncbi.nlm.nih.gov/pubmed/37399256 http://dx.doi.org/10.1101/gr.277679.123 |
Ejemplares similares
-
Strobealign: flexible seed size enables ultra-fast and accurate read alignment
por: Sahlin, Kristoffer
Publicado: (2022) -
Efficient minimizer orders for large values of k using minimum decycling sets
por: Pellow, David, et al.
Publicado: (2023) -
Efficient High-Quality Metagenome Assembly from Long Accurate Reads using Minimizer-space de Bruijn Graphs
por: Benoit, Gaëtan, et al.
Publicado: (2023) -
Fast and accurate mapping of long reads to complete genome assemblies with VerityMap
por: Bzikadze, Andrey V., et al.
Publicado: (2022) -
Accurate spliced alignment of long RNA sequencing reads
por: Sahlin, Kristoffer, et al.
Publicado: (2021)