Efficient High-Quality Metagenome Assembly from Long Accurate Reads using Minimizer-space de Bruijn Graphs

We introduce a novel metagenomics assembler for high-accuracy long reads. Our approach, implemented as metaMDBG, combines highly efficient de Bruijn graph assembly in minimizer space, with both a multi-k′ approach for dealing with variations in genome coverage depth and an abundance-based filtering...

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Detalles Bibliográficos
Autores principales: Benoit, Gaëtan, Raguideau, Sébastien, James, Robert, Phillippy, Adam M., Chikhi, Rayan, Quince, Christopher
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10541625/
https://www.ncbi.nlm.nih.gov/pubmed/37786716
http://dx.doi.org/10.1101/2023.07.07.548136

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10541625/
https://www.ncbi.nlm.nih.gov/pubmed/37786716
http://dx.doi.org/10.1101/2023.07.07.548136

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