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Asymmetric Periodic Boundary Conditions for All-Atom Molecular Dynamics and Coarse-Grained Simulations of Nucleic Acids

[Image: see text] Periodic boundary conditions are commonly applied in molecular dynamics simulations in the microcanonical (NVE), canonical (NVT), and isothermal–isobaric (NpT) ensembles. In their simplest application, a biological system of interest is placed in the middle of a solvation box, whic...

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Detalles Bibliográficos
Autores principales: Erban, Radek, Togashi, Yuichi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2023
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10544013/
https://www.ncbi.nlm.nih.gov/pubmed/37713594
http://dx.doi.org/10.1021/acs.jpcb.3c03887