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Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks

A vexing observation in genome-wide association studies (GWASs) is that parallel analyses in different species may not identify orthologous genes. Here, we demonstrate that cross-species translation of GWASs can be greatly improved by an analysis of co-localization within molecular networks. Using b...

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Autores principales: Wright, Sarah N., Leger, Brittany S., Rosenthal, Sara Brin, Liu, Sophie N., Jia, Tongqiu, Chitre, Apurva S., Polesskaya, Oksana, Holl, Katie, Gao, Jianjun, Cheng, Riyan, Martinez, Angel Garcia, George, Anthony, Gileta, Alexander F., Han, Wenyan, Netzley, Alesa H., King, Christopher P., Lamparelli, Alexander, Martin, Connor, St. Pierre, Celine L., Wang, Tengfei, Bimschleger, Hannah, Richards, Jerry, Ishiwari, Keita, Chen, Hao, Flagel, Shelly B., Meyer, Paul, Robinson, Terry E., Woods, Leah C. Solberg, Kreisberg, Jason F., Ideker, Trey, Palmer, Abraham A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10546330/
https://www.ncbi.nlm.nih.gov/pubmed/37527041
http://dx.doi.org/10.1016/j.celrep.2023.112873
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author Wright, Sarah N.
Leger, Brittany S.
Rosenthal, Sara Brin
Liu, Sophie N.
Jia, Tongqiu
Chitre, Apurva S.
Polesskaya, Oksana
Holl, Katie
Gao, Jianjun
Cheng, Riyan
Martinez, Angel Garcia
George, Anthony
Gileta, Alexander F.
Han, Wenyan
Netzley, Alesa H.
King, Christopher P.
Lamparelli, Alexander
Martin, Connor
St. Pierre, Celine L.
Wang, Tengfei
Bimschleger, Hannah
Richards, Jerry
Ishiwari, Keita
Chen, Hao
Flagel, Shelly B.
Meyer, Paul
Robinson, Terry E.
Woods, Leah C. Solberg
Kreisberg, Jason F.
Ideker, Trey
Palmer, Abraham A.
author_facet Wright, Sarah N.
Leger, Brittany S.
Rosenthal, Sara Brin
Liu, Sophie N.
Jia, Tongqiu
Chitre, Apurva S.
Polesskaya, Oksana
Holl, Katie
Gao, Jianjun
Cheng, Riyan
Martinez, Angel Garcia
George, Anthony
Gileta, Alexander F.
Han, Wenyan
Netzley, Alesa H.
King, Christopher P.
Lamparelli, Alexander
Martin, Connor
St. Pierre, Celine L.
Wang, Tengfei
Bimschleger, Hannah
Richards, Jerry
Ishiwari, Keita
Chen, Hao
Flagel, Shelly B.
Meyer, Paul
Robinson, Terry E.
Woods, Leah C. Solberg
Kreisberg, Jason F.
Ideker, Trey
Palmer, Abraham A.
author_sort Wright, Sarah N.
collection PubMed
description A vexing observation in genome-wide association studies (GWASs) is that parallel analyses in different species may not identify orthologous genes. Here, we demonstrate that cross-species translation of GWASs can be greatly improved by an analysis of co-localization within molecular networks. Using body mass index (BMI) as an example, we show that the genes associated with BMI in humans lack significant agreement with those identified in rats. However, the networks interconnecting these genes show substantial overlap, highlighting common mechanisms including synaptic signaling, epigenetic modification, and hormonal regulation. Genetic perturbations within these networks cause abnormal BMI phenotypes in mice, too, supporting their broad conservation across mammals. Other mechanisms appear species specific, including carbohydrate biosynthesis (humans) and glycerolipid metabolism (rodents). Finally, network co-localization also identifies cross-species convergence for height/body length. This study advances a general paradigm for determining whether and how phenotypes measured in model species recapitulate human biology.
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spelling pubmed-105463302023-10-03 Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks Wright, Sarah N. Leger, Brittany S. Rosenthal, Sara Brin Liu, Sophie N. Jia, Tongqiu Chitre, Apurva S. Polesskaya, Oksana Holl, Katie Gao, Jianjun Cheng, Riyan Martinez, Angel Garcia George, Anthony Gileta, Alexander F. Han, Wenyan Netzley, Alesa H. King, Christopher P. Lamparelli, Alexander Martin, Connor St. Pierre, Celine L. Wang, Tengfei Bimschleger, Hannah Richards, Jerry Ishiwari, Keita Chen, Hao Flagel, Shelly B. Meyer, Paul Robinson, Terry E. Woods, Leah C. Solberg Kreisberg, Jason F. Ideker, Trey Palmer, Abraham A. Cell Rep Article A vexing observation in genome-wide association studies (GWASs) is that parallel analyses in different species may not identify orthologous genes. Here, we demonstrate that cross-species translation of GWASs can be greatly improved by an analysis of co-localization within molecular networks. Using body mass index (BMI) as an example, we show that the genes associated with BMI in humans lack significant agreement with those identified in rats. However, the networks interconnecting these genes show substantial overlap, highlighting common mechanisms including synaptic signaling, epigenetic modification, and hormonal regulation. Genetic perturbations within these networks cause abnormal BMI phenotypes in mice, too, supporting their broad conservation across mammals. Other mechanisms appear species specific, including carbohydrate biosynthesis (humans) and glycerolipid metabolism (rodents). Finally, network co-localization also identifies cross-species convergence for height/body length. This study advances a general paradigm for determining whether and how phenotypes measured in model species recapitulate human biology. 2023-08-29 2023-07-31 /pmc/articles/PMC10546330/ /pubmed/37527041 http://dx.doi.org/10.1016/j.celrep.2023.112873 Text en https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ).
spellingShingle Article
Wright, Sarah N.
Leger, Brittany S.
Rosenthal, Sara Brin
Liu, Sophie N.
Jia, Tongqiu
Chitre, Apurva S.
Polesskaya, Oksana
Holl, Katie
Gao, Jianjun
Cheng, Riyan
Martinez, Angel Garcia
George, Anthony
Gileta, Alexander F.
Han, Wenyan
Netzley, Alesa H.
King, Christopher P.
Lamparelli, Alexander
Martin, Connor
St. Pierre, Celine L.
Wang, Tengfei
Bimschleger, Hannah
Richards, Jerry
Ishiwari, Keita
Chen, Hao
Flagel, Shelly B.
Meyer, Paul
Robinson, Terry E.
Woods, Leah C. Solberg
Kreisberg, Jason F.
Ideker, Trey
Palmer, Abraham A.
Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks
title Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks
title_full Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks
title_fullStr Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks
title_full_unstemmed Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks
title_short Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks
title_sort genome-wide association studies of human and rat bmi converge on synapse, epigenome, and hormone signaling networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10546330/
https://www.ncbi.nlm.nih.gov/pubmed/37527041
http://dx.doi.org/10.1016/j.celrep.2023.112873
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