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Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks
A vexing observation in genome-wide association studies (GWASs) is that parallel analyses in different species may not identify orthologous genes. Here, we demonstrate that cross-species translation of GWASs can be greatly improved by an analysis of co-localization within molecular networks. Using b...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10546330/ https://www.ncbi.nlm.nih.gov/pubmed/37527041 http://dx.doi.org/10.1016/j.celrep.2023.112873 |
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author | Wright, Sarah N. Leger, Brittany S. Rosenthal, Sara Brin Liu, Sophie N. Jia, Tongqiu Chitre, Apurva S. Polesskaya, Oksana Holl, Katie Gao, Jianjun Cheng, Riyan Martinez, Angel Garcia George, Anthony Gileta, Alexander F. Han, Wenyan Netzley, Alesa H. King, Christopher P. Lamparelli, Alexander Martin, Connor St. Pierre, Celine L. Wang, Tengfei Bimschleger, Hannah Richards, Jerry Ishiwari, Keita Chen, Hao Flagel, Shelly B. Meyer, Paul Robinson, Terry E. Woods, Leah C. Solberg Kreisberg, Jason F. Ideker, Trey Palmer, Abraham A. |
author_facet | Wright, Sarah N. Leger, Brittany S. Rosenthal, Sara Brin Liu, Sophie N. Jia, Tongqiu Chitre, Apurva S. Polesskaya, Oksana Holl, Katie Gao, Jianjun Cheng, Riyan Martinez, Angel Garcia George, Anthony Gileta, Alexander F. Han, Wenyan Netzley, Alesa H. King, Christopher P. Lamparelli, Alexander Martin, Connor St. Pierre, Celine L. Wang, Tengfei Bimschleger, Hannah Richards, Jerry Ishiwari, Keita Chen, Hao Flagel, Shelly B. Meyer, Paul Robinson, Terry E. Woods, Leah C. Solberg Kreisberg, Jason F. Ideker, Trey Palmer, Abraham A. |
author_sort | Wright, Sarah N. |
collection | PubMed |
description | A vexing observation in genome-wide association studies (GWASs) is that parallel analyses in different species may not identify orthologous genes. Here, we demonstrate that cross-species translation of GWASs can be greatly improved by an analysis of co-localization within molecular networks. Using body mass index (BMI) as an example, we show that the genes associated with BMI in humans lack significant agreement with those identified in rats. However, the networks interconnecting these genes show substantial overlap, highlighting common mechanisms including synaptic signaling, epigenetic modification, and hormonal regulation. Genetic perturbations within these networks cause abnormal BMI phenotypes in mice, too, supporting their broad conservation across mammals. Other mechanisms appear species specific, including carbohydrate biosynthesis (humans) and glycerolipid metabolism (rodents). Finally, network co-localization also identifies cross-species convergence for height/body length. This study advances a general paradigm for determining whether and how phenotypes measured in model species recapitulate human biology. |
format | Online Article Text |
id | pubmed-10546330 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
record_format | MEDLINE/PubMed |
spelling | pubmed-105463302023-10-03 Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks Wright, Sarah N. Leger, Brittany S. Rosenthal, Sara Brin Liu, Sophie N. Jia, Tongqiu Chitre, Apurva S. Polesskaya, Oksana Holl, Katie Gao, Jianjun Cheng, Riyan Martinez, Angel Garcia George, Anthony Gileta, Alexander F. Han, Wenyan Netzley, Alesa H. King, Christopher P. Lamparelli, Alexander Martin, Connor St. Pierre, Celine L. Wang, Tengfei Bimschleger, Hannah Richards, Jerry Ishiwari, Keita Chen, Hao Flagel, Shelly B. Meyer, Paul Robinson, Terry E. Woods, Leah C. Solberg Kreisberg, Jason F. Ideker, Trey Palmer, Abraham A. Cell Rep Article A vexing observation in genome-wide association studies (GWASs) is that parallel analyses in different species may not identify orthologous genes. Here, we demonstrate that cross-species translation of GWASs can be greatly improved by an analysis of co-localization within molecular networks. Using body mass index (BMI) as an example, we show that the genes associated with BMI in humans lack significant agreement with those identified in rats. However, the networks interconnecting these genes show substantial overlap, highlighting common mechanisms including synaptic signaling, epigenetic modification, and hormonal regulation. Genetic perturbations within these networks cause abnormal BMI phenotypes in mice, too, supporting their broad conservation across mammals. Other mechanisms appear species specific, including carbohydrate biosynthesis (humans) and glycerolipid metabolism (rodents). Finally, network co-localization also identifies cross-species convergence for height/body length. This study advances a general paradigm for determining whether and how phenotypes measured in model species recapitulate human biology. 2023-08-29 2023-07-31 /pmc/articles/PMC10546330/ /pubmed/37527041 http://dx.doi.org/10.1016/j.celrep.2023.112873 Text en https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ). |
spellingShingle | Article Wright, Sarah N. Leger, Brittany S. Rosenthal, Sara Brin Liu, Sophie N. Jia, Tongqiu Chitre, Apurva S. Polesskaya, Oksana Holl, Katie Gao, Jianjun Cheng, Riyan Martinez, Angel Garcia George, Anthony Gileta, Alexander F. Han, Wenyan Netzley, Alesa H. King, Christopher P. Lamparelli, Alexander Martin, Connor St. Pierre, Celine L. Wang, Tengfei Bimschleger, Hannah Richards, Jerry Ishiwari, Keita Chen, Hao Flagel, Shelly B. Meyer, Paul Robinson, Terry E. Woods, Leah C. Solberg Kreisberg, Jason F. Ideker, Trey Palmer, Abraham A. Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks |
title | Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks |
title_full | Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks |
title_fullStr | Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks |
title_full_unstemmed | Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks |
title_short | Genome-wide association studies of human and rat BMI converge on synapse, epigenome, and hormone signaling networks |
title_sort | genome-wide association studies of human and rat bmi converge on synapse, epigenome, and hormone signaling networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10546330/ https://www.ncbi.nlm.nih.gov/pubmed/37527041 http://dx.doi.org/10.1016/j.celrep.2023.112873 |
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