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Using machine learning for image-based analysis of sweetpotato root sensory attributes

The sweetpotato breeding process involves assessing different phenotypic traits, such as the sensory attributes, to decide which varieties to progress to the next stage during the breeding cycle. Sensory attributes like appearance, taste, colour and mealiness are important for consumer acceptability...

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Autores principales: Nakatumba-Nabende, Joyce, Babirye, Claire, Tusubira, Jeremy Francis, Mutegeki, Henry, Nabiryo, Ann Lisa, Murindanyi, Sudi, Katumba, Andrew, Nantongo, Judith, Sserunkuma, Edwin, Nakitto, Mariam, Ssali, Reuben, Makunde, Godwill, Moyo, Mukani, Campos, Hugo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10547598/
https://www.ncbi.nlm.nih.gov/pubmed/37800125
http://dx.doi.org/10.1016/j.atech.2023.100291
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author Nakatumba-Nabende, Joyce
Babirye, Claire
Tusubira, Jeremy Francis
Mutegeki, Henry
Nabiryo, Ann Lisa
Murindanyi, Sudi
Katumba, Andrew
Nantongo, Judith
Sserunkuma, Edwin
Nakitto, Mariam
Ssali, Reuben
Makunde, Godwill
Moyo, Mukani
Campos, Hugo
author_facet Nakatumba-Nabende, Joyce
Babirye, Claire
Tusubira, Jeremy Francis
Mutegeki, Henry
Nabiryo, Ann Lisa
Murindanyi, Sudi
Katumba, Andrew
Nantongo, Judith
Sserunkuma, Edwin
Nakitto, Mariam
Ssali, Reuben
Makunde, Godwill
Moyo, Mukani
Campos, Hugo
author_sort Nakatumba-Nabende, Joyce
collection PubMed
description The sweetpotato breeding process involves assessing different phenotypic traits, such as the sensory attributes, to decide which varieties to progress to the next stage during the breeding cycle. Sensory attributes like appearance, taste, colour and mealiness are important for consumer acceptability and adoption of new varieties. Therefore, measuring these sensory attributes is critical to inform the selection of varieties during breeding. Current methods using a trained human panel enable screening of different sweetpotato sensory attributes. Despite this, such methods are costly and time-consuming, leading to low throughput, which remains the biggest challenge for breeders. In this paper, we describe an approach to apply machine learning techniques with image-based analysis to predict flesh-colour and mealiness sweetpotato sensory attributes. The developed models can be used as high-throughput methods to augment existing approaches for the evaluation of flesh-colour and mealiness for different sweetpotato varieties. The work involved capturing images of boiled sweetpotato cross-sections using the DigiEye imaging system, data pre-processing for background elimination and feature extraction to develop machine learning models to predict the flesh-colour and mealiness sensory attributes of different sweetpotato varieties. For flesh-colour the trained Linear Regression and Random Forest Regression models attained [Formula: see text] values of 0.92 and 0.87, respectively, against the ground truth values given by a human sensory panel. In contrast, the Random Forest Regressor and Gradient Boosting model attained [Formula: see text] values of 0.85 and 0.80, respectively, for the prediction of mealiness. The performance of the models matched the desirable [Formula: see text] threshold of 0.80 for acceptable comparability to the human sensory panel showing that this approach can be used for the prediction of these attributes with high accuracy. The machine learning models were deployed and tested by the sweetpotato breeding team at the International Potato Center in Uganda. This solution can automate and increase throughput for analysing flesh-colour and mealiness sweetpotato sensory attributes. Using machine learning tools for analysis can inform and quicken the selection of promising varieties that can be progressed for participatory evaluation during breeding cycles and potentially lead to increased chances of adoption of the varieties by consumers.
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spelling pubmed-105475982023-10-05 Using machine learning for image-based analysis of sweetpotato root sensory attributes Nakatumba-Nabende, Joyce Babirye, Claire Tusubira, Jeremy Francis Mutegeki, Henry Nabiryo, Ann Lisa Murindanyi, Sudi Katumba, Andrew Nantongo, Judith Sserunkuma, Edwin Nakitto, Mariam Ssali, Reuben Makunde, Godwill Moyo, Mukani Campos, Hugo Smart Agric Technol Article The sweetpotato breeding process involves assessing different phenotypic traits, such as the sensory attributes, to decide which varieties to progress to the next stage during the breeding cycle. Sensory attributes like appearance, taste, colour and mealiness are important for consumer acceptability and adoption of new varieties. Therefore, measuring these sensory attributes is critical to inform the selection of varieties during breeding. Current methods using a trained human panel enable screening of different sweetpotato sensory attributes. Despite this, such methods are costly and time-consuming, leading to low throughput, which remains the biggest challenge for breeders. In this paper, we describe an approach to apply machine learning techniques with image-based analysis to predict flesh-colour and mealiness sweetpotato sensory attributes. The developed models can be used as high-throughput methods to augment existing approaches for the evaluation of flesh-colour and mealiness for different sweetpotato varieties. The work involved capturing images of boiled sweetpotato cross-sections using the DigiEye imaging system, data pre-processing for background elimination and feature extraction to develop machine learning models to predict the flesh-colour and mealiness sensory attributes of different sweetpotato varieties. For flesh-colour the trained Linear Regression and Random Forest Regression models attained [Formula: see text] values of 0.92 and 0.87, respectively, against the ground truth values given by a human sensory panel. In contrast, the Random Forest Regressor and Gradient Boosting model attained [Formula: see text] values of 0.85 and 0.80, respectively, for the prediction of mealiness. The performance of the models matched the desirable [Formula: see text] threshold of 0.80 for acceptable comparability to the human sensory panel showing that this approach can be used for the prediction of these attributes with high accuracy. The machine learning models were deployed and tested by the sweetpotato breeding team at the International Potato Center in Uganda. This solution can automate and increase throughput for analysing flesh-colour and mealiness sweetpotato sensory attributes. Using machine learning tools for analysis can inform and quicken the selection of promising varieties that can be progressed for participatory evaluation during breeding cycles and potentially lead to increased chances of adoption of the varieties by consumers. Elsevier B.V 2023-10 /pmc/articles/PMC10547598/ /pubmed/37800125 http://dx.doi.org/10.1016/j.atech.2023.100291 Text en © 2023 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Nakatumba-Nabende, Joyce
Babirye, Claire
Tusubira, Jeremy Francis
Mutegeki, Henry
Nabiryo, Ann Lisa
Murindanyi, Sudi
Katumba, Andrew
Nantongo, Judith
Sserunkuma, Edwin
Nakitto, Mariam
Ssali, Reuben
Makunde, Godwill
Moyo, Mukani
Campos, Hugo
Using machine learning for image-based analysis of sweetpotato root sensory attributes
title Using machine learning for image-based analysis of sweetpotato root sensory attributes
title_full Using machine learning for image-based analysis of sweetpotato root sensory attributes
title_fullStr Using machine learning for image-based analysis of sweetpotato root sensory attributes
title_full_unstemmed Using machine learning for image-based analysis of sweetpotato root sensory attributes
title_short Using machine learning for image-based analysis of sweetpotato root sensory attributes
title_sort using machine learning for image-based analysis of sweetpotato root sensory attributes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10547598/
https://www.ncbi.nlm.nih.gov/pubmed/37800125
http://dx.doi.org/10.1016/j.atech.2023.100291
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