GET_PANGENES: calling pangenes from plant genome alignments confirms presence-absence variation

Crop pangenomes made from individual cultivar assemblies promise easy access to conserved genes, but genome content variability and inconsistent identifiers hamper their exploration. To address this, we define pangenes, which summarize a species coding potential and link back to original annotations...

Descripción completa

Detalles Bibliográficos
Autores principales: Contreras-Moreira, Bruno, Saraf, Shradha, Naamati, Guy, Casas, Ana M., Amberkar, Sandeep S., Flicek, Paul, Jones, Andrew R., Dyer, Sarah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Method
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10552430/
https://www.ncbi.nlm.nih.gov/pubmed/37798615
http://dx.doi.org/10.1186/s13059-023-03071-z

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10552430/
https://www.ncbi.nlm.nih.gov/pubmed/37798615
http://dx.doi.org/10.1186/s13059-023-03071-z

Ejemplares similares