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Evaluation of the Polygenic Risk Score for Alzheimer’s Disease in Russian Patients with Dementia Using a Low-Density Hydrogel Oligonucleotide Microarray

The polygenic risk score (PRS), together with the ɛ4 allele of the APOE gene (APOE-ɛ4), has shown high potential for Alzheimer’s disease (AD) risk prediction. The aim of this study was to validate the model of polygenic risk in Russian patients with dementia. A microarray-based assay was developed t...

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Autores principales: Ikonnikova, Anna, Morozova, Anna, Antonova, Olga, Ochneva, Alexandra, Fedoseeva, Elena, Abramova, Olga, Emelyanova, Marina, Filippova, Marina, Morozova, Irina, Zorkina, Yana, Syunyakov, Timur, Andryushchenko, Alisa, Andreuyk, Denis, Kostyuk, Georgy, Gryadunov, Dmitry
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10572681/
https://www.ncbi.nlm.nih.gov/pubmed/37834213
http://dx.doi.org/10.3390/ijms241914765
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author Ikonnikova, Anna
Morozova, Anna
Antonova, Olga
Ochneva, Alexandra
Fedoseeva, Elena
Abramova, Olga
Emelyanova, Marina
Filippova, Marina
Morozova, Irina
Zorkina, Yana
Syunyakov, Timur
Andryushchenko, Alisa
Andreuyk, Denis
Kostyuk, Georgy
Gryadunov, Dmitry
author_facet Ikonnikova, Anna
Morozova, Anna
Antonova, Olga
Ochneva, Alexandra
Fedoseeva, Elena
Abramova, Olga
Emelyanova, Marina
Filippova, Marina
Morozova, Irina
Zorkina, Yana
Syunyakov, Timur
Andryushchenko, Alisa
Andreuyk, Denis
Kostyuk, Georgy
Gryadunov, Dmitry
author_sort Ikonnikova, Anna
collection PubMed
description The polygenic risk score (PRS), together with the ɛ4 allele of the APOE gene (APOE-ɛ4), has shown high potential for Alzheimer’s disease (AD) risk prediction. The aim of this study was to validate the model of polygenic risk in Russian patients with dementia. A microarray-based assay was developed to identify 21 markers of polygenic risk and ɛ alleles of the APOE gene. This case–control study included 348 dementia patients and 519 cognitively normal volunteers. Cerebrospinal fluid (CSF) amyloid-β (Aβ) and tau protein levels were assessed in 57 dementia patients. PRS and APOE-ɛ4 were significant genetic risk factors for dementia. Adjusted for APOE-ɛ4, individuals with PRS corresponding to the fourth quartile had an increased risk of dementia compared to the first quartile (OR 1.85; p-value 0.002). The area under the curve (AUC) was 0.559 for the PRS model only, and the inclusion of APOE-ɛ4 improved the AUC to 0.604. PRS was positively correlated with tTau and pTau181 and inversely correlated with Aβ42/Aβ40 ratio. Carriers of APOE-ɛ4 had higher levels of tTau and pTau181 and lower levels of Aβ42 and Aβ42/Aβ40. The developed assay can be part of a strategy for assessing individuals for AD risk, with the purpose of assisting primary preventive interventions.
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spelling pubmed-105726812023-10-14 Evaluation of the Polygenic Risk Score for Alzheimer’s Disease in Russian Patients with Dementia Using a Low-Density Hydrogel Oligonucleotide Microarray Ikonnikova, Anna Morozova, Anna Antonova, Olga Ochneva, Alexandra Fedoseeva, Elena Abramova, Olga Emelyanova, Marina Filippova, Marina Morozova, Irina Zorkina, Yana Syunyakov, Timur Andryushchenko, Alisa Andreuyk, Denis Kostyuk, Georgy Gryadunov, Dmitry Int J Mol Sci Article The polygenic risk score (PRS), together with the ɛ4 allele of the APOE gene (APOE-ɛ4), has shown high potential for Alzheimer’s disease (AD) risk prediction. The aim of this study was to validate the model of polygenic risk in Russian patients with dementia. A microarray-based assay was developed to identify 21 markers of polygenic risk and ɛ alleles of the APOE gene. This case–control study included 348 dementia patients and 519 cognitively normal volunteers. Cerebrospinal fluid (CSF) amyloid-β (Aβ) and tau protein levels were assessed in 57 dementia patients. PRS and APOE-ɛ4 were significant genetic risk factors for dementia. Adjusted for APOE-ɛ4, individuals with PRS corresponding to the fourth quartile had an increased risk of dementia compared to the first quartile (OR 1.85; p-value 0.002). The area under the curve (AUC) was 0.559 for the PRS model only, and the inclusion of APOE-ɛ4 improved the AUC to 0.604. PRS was positively correlated with tTau and pTau181 and inversely correlated with Aβ42/Aβ40 ratio. Carriers of APOE-ɛ4 had higher levels of tTau and pTau181 and lower levels of Aβ42 and Aβ42/Aβ40. The developed assay can be part of a strategy for assessing individuals for AD risk, with the purpose of assisting primary preventive interventions. MDPI 2023-09-29 /pmc/articles/PMC10572681/ /pubmed/37834213 http://dx.doi.org/10.3390/ijms241914765 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ikonnikova, Anna
Morozova, Anna
Antonova, Olga
Ochneva, Alexandra
Fedoseeva, Elena
Abramova, Olga
Emelyanova, Marina
Filippova, Marina
Morozova, Irina
Zorkina, Yana
Syunyakov, Timur
Andryushchenko, Alisa
Andreuyk, Denis
Kostyuk, Georgy
Gryadunov, Dmitry
Evaluation of the Polygenic Risk Score for Alzheimer’s Disease in Russian Patients with Dementia Using a Low-Density Hydrogel Oligonucleotide Microarray
title Evaluation of the Polygenic Risk Score for Alzheimer’s Disease in Russian Patients with Dementia Using a Low-Density Hydrogel Oligonucleotide Microarray
title_full Evaluation of the Polygenic Risk Score for Alzheimer’s Disease in Russian Patients with Dementia Using a Low-Density Hydrogel Oligonucleotide Microarray
title_fullStr Evaluation of the Polygenic Risk Score for Alzheimer’s Disease in Russian Patients with Dementia Using a Low-Density Hydrogel Oligonucleotide Microarray
title_full_unstemmed Evaluation of the Polygenic Risk Score for Alzheimer’s Disease in Russian Patients with Dementia Using a Low-Density Hydrogel Oligonucleotide Microarray
title_short Evaluation of the Polygenic Risk Score for Alzheimer’s Disease in Russian Patients with Dementia Using a Low-Density Hydrogel Oligonucleotide Microarray
title_sort evaluation of the polygenic risk score for alzheimer’s disease in russian patients with dementia using a low-density hydrogel oligonucleotide microarray
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10572681/
https://www.ncbi.nlm.nih.gov/pubmed/37834213
http://dx.doi.org/10.3390/ijms241914765
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