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A critical re-evaluation of the slope factor of the operational model of agonism: When to exponentiate operational efficacy
Agonist efficacy denoting the “strength” of agonist action is a cornerstone in the proper assessment of agonist selectivity and signalling bias. The simulation models are very accurate but complex and hard to fit experimental data. The parsimonious operational model of agonism (OMA) has become succe...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10579308/ https://www.ncbi.nlm.nih.gov/pubmed/37845324 http://dx.doi.org/10.1038/s41598-023-45004-7 |
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author | Randáková, Alena Nelic, Dominik Jakubík, Jan |
author_facet | Randáková, Alena Nelic, Dominik Jakubík, Jan |
author_sort | Randáková, Alena |
collection | PubMed |
description | Agonist efficacy denoting the “strength” of agonist action is a cornerstone in the proper assessment of agonist selectivity and signalling bias. The simulation models are very accurate but complex and hard to fit experimental data. The parsimonious operational model of agonism (OMA) has become successful in the determination of agonist efficacies and ranking them. In 1983, Black and Leff introduced the slope factor to the OMA to make it more flexible and allow for fitting steep as well as flat concentration–response curves. First, we performed a functional analysis to indicate the potential pitfalls of the OMA. Namely, exponentiation of operational efficacy may break relationships among the OMA parameters. The fitting of the Black & Leff equation to the theoretical curves of several models of functional responses and the experimental data confirmed the fickleness of the exponentiation of operational efficacy affecting estimates of operational efficacy as well as other OMA parameters. In contrast, fitting The OMA based on the Hill equation to the same data led to better estimates of model parameters. In conclusion, Hill equation-based OMA should be preferred over the Black & Leff equation when functional-response curves differ in the slope factor. Otherwise, the Black & Leff equation should be used with extreme caution acknowledging potential pitfalls. |
format | Online Article Text |
id | pubmed-10579308 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-105793082023-10-18 A critical re-evaluation of the slope factor of the operational model of agonism: When to exponentiate operational efficacy Randáková, Alena Nelic, Dominik Jakubík, Jan Sci Rep Article Agonist efficacy denoting the “strength” of agonist action is a cornerstone in the proper assessment of agonist selectivity and signalling bias. The simulation models are very accurate but complex and hard to fit experimental data. The parsimonious operational model of agonism (OMA) has become successful in the determination of agonist efficacies and ranking them. In 1983, Black and Leff introduced the slope factor to the OMA to make it more flexible and allow for fitting steep as well as flat concentration–response curves. First, we performed a functional analysis to indicate the potential pitfalls of the OMA. Namely, exponentiation of operational efficacy may break relationships among the OMA parameters. The fitting of the Black & Leff equation to the theoretical curves of several models of functional responses and the experimental data confirmed the fickleness of the exponentiation of operational efficacy affecting estimates of operational efficacy as well as other OMA parameters. In contrast, fitting The OMA based on the Hill equation to the same data led to better estimates of model parameters. In conclusion, Hill equation-based OMA should be preferred over the Black & Leff equation when functional-response curves differ in the slope factor. Otherwise, the Black & Leff equation should be used with extreme caution acknowledging potential pitfalls. Nature Publishing Group UK 2023-10-16 /pmc/articles/PMC10579308/ /pubmed/37845324 http://dx.doi.org/10.1038/s41598-023-45004-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Randáková, Alena Nelic, Dominik Jakubík, Jan A critical re-evaluation of the slope factor of the operational model of agonism: When to exponentiate operational efficacy |
title | A critical re-evaluation of the slope factor of the operational model of agonism: When to exponentiate operational efficacy |
title_full | A critical re-evaluation of the slope factor of the operational model of agonism: When to exponentiate operational efficacy |
title_fullStr | A critical re-evaluation of the slope factor of the operational model of agonism: When to exponentiate operational efficacy |
title_full_unstemmed | A critical re-evaluation of the slope factor of the operational model of agonism: When to exponentiate operational efficacy |
title_short | A critical re-evaluation of the slope factor of the operational model of agonism: When to exponentiate operational efficacy |
title_sort | critical re-evaluation of the slope factor of the operational model of agonism: when to exponentiate operational efficacy |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10579308/ https://www.ncbi.nlm.nih.gov/pubmed/37845324 http://dx.doi.org/10.1038/s41598-023-45004-7 |
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