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Molecular docking and in vitro analysis of peptides from Stolephorus indicus with ACE2
Peptides from Stolephorus indicus (Anchovies) meat lysate were generated using a Bacillus subtilis cysteine protease. The peptides were generated by enzyme hydrolysis after which the hydrolysate containing peptides were analysed by LC-MS/MS. Computer aided analysis of peptides using CASTp server and...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10599664/ https://www.ncbi.nlm.nih.gov/pubmed/37886156 http://dx.doi.org/10.6026/97320630019531 |
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author | Usha Rani, Keshapaga Gulam Mohammed, Husain Satyanarayana Singh, Surya Sandeepta, Burgula |
author_facet | Usha Rani, Keshapaga Gulam Mohammed, Husain Satyanarayana Singh, Surya Sandeepta, Burgula |
author_sort | Usha Rani, Keshapaga |
collection | PubMed |
description | Peptides from Stolephorus indicus (Anchovies) meat lysate were generated using a Bacillus subtilis cysteine protease. The peptides were generated by enzyme hydrolysis after which the hydrolysate containing peptides were analysed by LC-MS/MS. Computer aided analysis of peptides using CASTp server and GOLD software show four peptides having ACE2 inhibitory activity. Further, peptides 1 (8 amino acids), 2 (8 amino acid), 5 (9 amino acids) and 11 (12 amino acids) showed good docking features for binding to ACE2 enzyme active sites, mainly by hydrogen bonding. Peptide 1 (8 amino acids-octa-peptide) having the highest docking score was tested in vitro for ACE2 binding and showed up to 40 % inhibition of ACE2 activity at a concentration of 10mM. Hence, this octa-peptide has a potential role in applications involving ACE2 inhibition thereby leading to the prevention of binding of spike glycoprotein to ACE2 receptor. |
format | Online Article Text |
id | pubmed-10599664 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-105996642023-10-26 Molecular docking and in vitro analysis of peptides from Stolephorus indicus with ACE2 Usha Rani, Keshapaga Gulam Mohammed, Husain Satyanarayana Singh, Surya Sandeepta, Burgula Bioinformation Research Article Peptides from Stolephorus indicus (Anchovies) meat lysate were generated using a Bacillus subtilis cysteine protease. The peptides were generated by enzyme hydrolysis after which the hydrolysate containing peptides were analysed by LC-MS/MS. Computer aided analysis of peptides using CASTp server and GOLD software show four peptides having ACE2 inhibitory activity. Further, peptides 1 (8 amino acids), 2 (8 amino acid), 5 (9 amino acids) and 11 (12 amino acids) showed good docking features for binding to ACE2 enzyme active sites, mainly by hydrogen bonding. Peptide 1 (8 amino acids-octa-peptide) having the highest docking score was tested in vitro for ACE2 binding and showed up to 40 % inhibition of ACE2 activity at a concentration of 10mM. Hence, this octa-peptide has a potential role in applications involving ACE2 inhibition thereby leading to the prevention of binding of spike glycoprotein to ACE2 receptor. Biomedical Informatics 2023-05-31 /pmc/articles/PMC10599664/ /pubmed/37886156 http://dx.doi.org/10.6026/97320630019531 Text en © 2023 Biomedical Informatics https://creativecommons.org/licenses/by/3.0/This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License. |
spellingShingle | Research Article Usha Rani, Keshapaga Gulam Mohammed, Husain Satyanarayana Singh, Surya Sandeepta, Burgula Molecular docking and in vitro analysis of peptides from Stolephorus indicus with ACE2 |
title | Molecular docking and in vitro analysis of peptides
from Stolephorus indicus with ACE2 |
title_full | Molecular docking and in vitro analysis of peptides
from Stolephorus indicus with ACE2 |
title_fullStr | Molecular docking and in vitro analysis of peptides
from Stolephorus indicus with ACE2 |
title_full_unstemmed | Molecular docking and in vitro analysis of peptides
from Stolephorus indicus with ACE2 |
title_short | Molecular docking and in vitro analysis of peptides
from Stolephorus indicus with ACE2 |
title_sort | molecular docking and in vitro analysis of peptides
from stolephorus indicus with ace2 |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10599664/ https://www.ncbi.nlm.nih.gov/pubmed/37886156 http://dx.doi.org/10.6026/97320630019531 |
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