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Molecular docking and in vitro analysis of peptides from Stolephorus indicus with ACE2

Peptides from Stolephorus indicus (Anchovies) meat lysate were generated using a Bacillus subtilis cysteine protease. The peptides were generated by enzyme hydrolysis after which the hydrolysate containing peptides were analysed by LC-MS/MS. Computer aided analysis of peptides using CASTp server and...

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Autores principales: Usha Rani, Keshapaga, Gulam Mohammed, Husain, Satyanarayana Singh, Surya, Sandeepta, Burgula
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10599664/
https://www.ncbi.nlm.nih.gov/pubmed/37886156
http://dx.doi.org/10.6026/97320630019531
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author Usha Rani, Keshapaga
Gulam Mohammed, Husain
Satyanarayana Singh, Surya
Sandeepta, Burgula
author_facet Usha Rani, Keshapaga
Gulam Mohammed, Husain
Satyanarayana Singh, Surya
Sandeepta, Burgula
author_sort Usha Rani, Keshapaga
collection PubMed
description Peptides from Stolephorus indicus (Anchovies) meat lysate were generated using a Bacillus subtilis cysteine protease. The peptides were generated by enzyme hydrolysis after which the hydrolysate containing peptides were analysed by LC-MS/MS. Computer aided analysis of peptides using CASTp server and GOLD software show four peptides having ACE2 inhibitory activity. Further, peptides 1 (8 amino acids), 2 (8 amino acid), 5 (9 amino acids) and 11 (12 amino acids) showed good docking features for binding to ACE2 enzyme active sites, mainly by hydrogen bonding. Peptide 1 (8 amino acids-octa-peptide) having the highest docking score was tested in vitro for ACE2 binding and showed up to 40 % inhibition of ACE2 activity at a concentration of 10mM. Hence, this octa-peptide has a potential role in applications involving ACE2 inhibition thereby leading to the prevention of binding of spike glycoprotein to ACE2 receptor.
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spelling pubmed-105996642023-10-26 Molecular docking and in vitro analysis of peptides from Stolephorus indicus with ACE2 Usha Rani, Keshapaga Gulam Mohammed, Husain Satyanarayana Singh, Surya Sandeepta, Burgula Bioinformation Research Article Peptides from Stolephorus indicus (Anchovies) meat lysate were generated using a Bacillus subtilis cysteine protease. The peptides were generated by enzyme hydrolysis after which the hydrolysate containing peptides were analysed by LC-MS/MS. Computer aided analysis of peptides using CASTp server and GOLD software show four peptides having ACE2 inhibitory activity. Further, peptides 1 (8 amino acids), 2 (8 amino acid), 5 (9 amino acids) and 11 (12 amino acids) showed good docking features for binding to ACE2 enzyme active sites, mainly by hydrogen bonding. Peptide 1 (8 amino acids-octa-peptide) having the highest docking score was tested in vitro for ACE2 binding and showed up to 40 % inhibition of ACE2 activity at a concentration of 10mM. Hence, this octa-peptide has a potential role in applications involving ACE2 inhibition thereby leading to the prevention of binding of spike glycoprotein to ACE2 receptor. Biomedical Informatics 2023-05-31 /pmc/articles/PMC10599664/ /pubmed/37886156 http://dx.doi.org/10.6026/97320630019531 Text en © 2023 Biomedical Informatics https://creativecommons.org/licenses/by/3.0/This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Research Article
Usha Rani, Keshapaga
Gulam Mohammed, Husain
Satyanarayana Singh, Surya
Sandeepta, Burgula
Molecular docking and in vitro analysis of peptides from Stolephorus indicus with ACE2
title Molecular docking and in vitro analysis of peptides from Stolephorus indicus with ACE2
title_full Molecular docking and in vitro analysis of peptides from Stolephorus indicus with ACE2
title_fullStr Molecular docking and in vitro analysis of peptides from Stolephorus indicus with ACE2
title_full_unstemmed Molecular docking and in vitro analysis of peptides from Stolephorus indicus with ACE2
title_short Molecular docking and in vitro analysis of peptides from Stolephorus indicus with ACE2
title_sort molecular docking and in vitro analysis of peptides from stolephorus indicus with ace2
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10599664/
https://www.ncbi.nlm.nih.gov/pubmed/37886156
http://dx.doi.org/10.6026/97320630019531
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