Cargando…

Bayesian inference of relative fitness on high-throughput pooled competition assays

The tracking of lineage frequencies via DNA barcode sequencing enables the quantification of microbial fitness. However, experimental noise coming from biotic and abiotic sources complicates the computation of a reliable inference. We present a Bayesian pipeline to infer relative microbial fitness f...

Descripción completa

Detalles Bibliográficos
Autores principales:	Razo-Mejia, Manuel, Mani, Madhav, Petrov, Dmitri
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10614806/ https://www.ncbi.nlm.nih.gov/pubmed/37904971 http://dx.doi.org/10.1101/2023.10.14.562365

Ejemplares similares

Fit-Seq2.0: An Improved Software for High-Throughput Fitness Measurements Using Pooled Competition Assays
por: Li, Fangfei, et al.
Publicado: (2023)

Efficient Bayesian inference for mechanistic modelling with high-throughput data
por: Martina Perez, Simon, et al.
Publicado: (2022)

LDx: Estimation of Linkage Disequilibrium from High-Throughput Pooled Resequencing Data
por: Feder, Alison F., et al.
Publicado: (2012)

Bayesian modelling of high-throughput sequencing assays with malacoda
por: Ghazi, Andrew R., et al.
Publicado: (2020)

Bayesian Inference of Natural Rankings in Incomplete Competition Networks
por: Park, Juyong, et al.
Publicado: (2014)

Bayesian inference for form-factor fits regulated by unitarity and analyticity
por: Flynn, J.M., et al.
Publicado: (2023)

Hierarchical Bayesian inference for concurrent model fitting and comparison for group studies
por: Piray, Payam, et al.
Publicado: (2019)

Marked Neurospora crassa Strains for Competition Experiments and Bayesian Methods for Fitness Estimates
por: Kronholm, Ilkka, et al.
Publicado: (2020)

Bayesian inference
por: Cardenas, Rosario O
Publicado: (2018)

Fluorescent Protein Expression as a Proxy for Bacterial Fitness in a High-Throughput Assay
por: Schlechter, Rudolf O., et al.
Publicado: (2021)

Bayesian inference of reassortment networks reveals fitness benefits of reassortment in human influenza viruses
por: Müller, Nicola F., et al.
Publicado: (2020)

Weighted pooling—practical and cost-effective techniques for pooled high-throughput sequencing
por: Golan, David, et al.
Publicado: (2012)

DRABAL: novel method to mine large high-throughput screening assays using Bayesian active learning
por: Soufan, Othman, et al.
Publicado: (2016)

Non‐additive effects between genotypes: Implications for competitive fitness assays
por: Xiao, Changyi, et al.
Publicado: (2023)

Approximate Bayesian Inference
por: Alquier, Pierre
Publicado: (2020)

Designing Allele-Specific Competitive-Extension PCR-Based Assays for High-Throughput Genotyping and Gene Characterization
por: Kalendar, Ruslan, et al.
Publicado: (2022)

High-throughput comparison of gene fitness among related bacteria
por: Canals, Rocio, et al.
Publicado: (2012)

Are Narrow Focus Exhaustivity Inferences Bayesian Inferences?
por: Schreiber, Alexander, et al.
Publicado: (2021)

Pairwise Growth Competition Assay for Determining the Replication Fitness of Human Immunodeficiency Viruses
por: Manocheewa, Siriphan, et al.
Publicado: (2015)

Bayesian methods for hackers: probabilistic programming and Bayesian inference
por: Davidson-Pilon, Cameron
Publicado: (2016)

Bayesian Multi-Plate High-Throughput Screening of Compounds
por: Shterev, Ivo D., et al.
Publicado: (2018)

Bayesian inference for stochastic processes
por: Broemeling, Lyle D
Publicado: (2017)

An introduction to Bayesian inference and decision /
por: Winkler, Robert L.
Publicado: (1972)

Bayesian inference with geodetic applications /
por: Koch, Karl-Rudolf
Publicado: (1990)

Bayesian inference in statistical analysis
por: Box, George E. P.
Publicado: (1973)

An introduction to Bayesian inference in econometrics
por: Zellner, Arnold
Publicado: (1971)

Bayesian Inference in Statistical Analysis
por: Box, George E P, et al.
Publicado: (2011)

Nonparametric Bayesian inference in biostatistics
por: Mitra, Riten, et al.
Publicado: (2015)

Patterns of scalable Bayesian inference
por: Angelino, Elaine, et al.
Publicado: (2016)

Network Plasticity as Bayesian Inference
por: Kappel, David, et al.
Publicado: (2015)

Bayesian Inference on Proportional Elections
por: Brunello, Gabriel Hideki Vatanabe, et al.
Publicado: (2015)

Computational Neuropsychology and Bayesian Inference
por: Parr, Thomas, et al.
Publicado: (2018)

Bayesian inference of neuronal assemblies
por: Diana, Giovanni, et al.
Publicado: (2019)

Bayesian inference for dynamical systems
por: Roda, Weston C.
Publicado: (2020)

Bayesian inference of population prevalence
por: Ince, Robin AA, et al.
Publicado: (2021)

Editorial: Bayesian Inference and AI
por: Tang, Niansheng, et al.
Publicado: (2022)

Bayesian optimization for demographic inference
por: Noskova, Ekaterina, et al.
Publicado: (2023)

Bayesian inference of antigenic and non-antigenic variables from haemagglutination inhibition assays for influenza surveillance
por: Adabor, Emmanuel S., et al.
Publicado: (2018)

A high-throughput single-particle imaging platform for antibody characterization and a novel competition assay for therapeutic antibodies
por: Seymour, Elif, et al.
Publicado: (2023)

Inferring single-cell transcriptomic dynamics with structured latent gene expression dynamics
por: Farrell, Spencer, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_3dm1c036s9jg6bpe0h85qub47o