Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations

Phylogenetics has been foundational to SARS-CoV-2 research and public health policy, assisting in genomic surveillance, contact tracing, and assessing emergence and spread of new variants. However, phylogenetic analyses of SARS-CoV-2 have often relied on tools designed for de novo phylogenetic infer...

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Detalles Bibliográficos
Autores principales: Kramer, Alexander M, Thornlow, Bryan, Ye, Cheng, De Maio, Nicola, McBroome, Jakob, Hinrichs, Angie S, Lanfear, Robert, Turakhia, Yatish, Corbett-Detig, Russell
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Regular Manuscripts
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10627557/
https://www.ncbi.nlm.nih.gov/pubmed/37232476
http://dx.doi.org/10.1093/sysbio/syad031

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10627557/
https://www.ncbi.nlm.nih.gov/pubmed/37232476
http://dx.doi.org/10.1093/sysbio/syad031

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