LexicHash: sequence similarity estimation via lexicographic comparison of hashes

MOTIVATION: Pairwise sequence alignment is a heavy computational burden, particularly in the context of third-generation sequencing technologies. This issue is commonly addressed by approximately estimating sequence similarities using a hash-based method such as MinHash. In MinHash, all k-mers in a...

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Detalles Bibliográficos
Autores principales: Greenberg, Grant, Ravi, Aditya Narayan, Shomorony, Ilan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Original Paper
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10628434/
https://www.ncbi.nlm.nih.gov/pubmed/37878809
http://dx.doi.org/10.1093/bioinformatics/btad652

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10628434/
https://www.ncbi.nlm.nih.gov/pubmed/37878809
http://dx.doi.org/10.1093/bioinformatics/btad652

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