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The multiple activations in budding yeast S-phase checkpoint are Poisson processes

Eukaryotic cells activate the S-phase checkpoint signal transduction pathway in response to DNA replication stress. Affected by the noise in biochemical reactions, such activation process demonstrates cell-to-cell variability. Here, through the analysis of microfluidics-integrated time-lapse imaging...

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Detalles Bibliográficos
Autores principales: Gao, Xin, Zhou, Peijie, Li, Fangting
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10629469/
https://www.ncbi.nlm.nih.gov/pubmed/37941810
http://dx.doi.org/10.1093/pnasnexus/pgad342
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author Gao, Xin
Zhou, Peijie
Li, Fangting
author_facet Gao, Xin
Zhou, Peijie
Li, Fangting
author_sort Gao, Xin
collection PubMed
description Eukaryotic cells activate the S-phase checkpoint signal transduction pathway in response to DNA replication stress. Affected by the noise in biochemical reactions, such activation process demonstrates cell-to-cell variability. Here, through the analysis of microfluidics-integrated time-lapse imaging, we found multiple S-phase checkpoint activations in a certain budding yeast cell cycle. Yeast cells not only varied in their activation moments but also differed in the number of activations within the cell cycle, resulting in a stochastic multiple activation process. By investigating dynamics at the single-cell level, we showed that stochastic waiting times between consecutive activations are exponentially distributed and independent from each other. Finite DNA replication time provides a robust upper time limit to the duration of multiple activations. The mathematical model, together with further experimental evidence from the mutant strain, revealed that the number of activations under different levels of replication stress agreed well with Poisson distribution. Therefore, the activation events of S-phase checkpoint meet the criterion of Poisson process during DNA replication. In sum, the observed Poisson activation process may provide new insights into the complex stochastic dynamics of signal transduction pathways.
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spelling pubmed-106294692023-11-08 The multiple activations in budding yeast S-phase checkpoint are Poisson processes Gao, Xin Zhou, Peijie Li, Fangting PNAS Nexus Biological, Health, and Medical Sciences Eukaryotic cells activate the S-phase checkpoint signal transduction pathway in response to DNA replication stress. Affected by the noise in biochemical reactions, such activation process demonstrates cell-to-cell variability. Here, through the analysis of microfluidics-integrated time-lapse imaging, we found multiple S-phase checkpoint activations in a certain budding yeast cell cycle. Yeast cells not only varied in their activation moments but also differed in the number of activations within the cell cycle, resulting in a stochastic multiple activation process. By investigating dynamics at the single-cell level, we showed that stochastic waiting times between consecutive activations are exponentially distributed and independent from each other. Finite DNA replication time provides a robust upper time limit to the duration of multiple activations. The mathematical model, together with further experimental evidence from the mutant strain, revealed that the number of activations under different levels of replication stress agreed well with Poisson distribution. Therefore, the activation events of S-phase checkpoint meet the criterion of Poisson process during DNA replication. In sum, the observed Poisson activation process may provide new insights into the complex stochastic dynamics of signal transduction pathways. Oxford University Press 2023-10-26 /pmc/articles/PMC10629469/ /pubmed/37941810 http://dx.doi.org/10.1093/pnasnexus/pgad342 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of National Academy of Sciences. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (https://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Biological, Health, and Medical Sciences
Gao, Xin
Zhou, Peijie
Li, Fangting
The multiple activations in budding yeast S-phase checkpoint are Poisson processes
title The multiple activations in budding yeast S-phase checkpoint are Poisson processes
title_full The multiple activations in budding yeast S-phase checkpoint are Poisson processes
title_fullStr The multiple activations in budding yeast S-phase checkpoint are Poisson processes
title_full_unstemmed The multiple activations in budding yeast S-phase checkpoint are Poisson processes
title_short The multiple activations in budding yeast S-phase checkpoint are Poisson processes
title_sort multiple activations in budding yeast s-phase checkpoint are poisson processes
topic Biological, Health, and Medical Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10629469/
https://www.ncbi.nlm.nih.gov/pubmed/37941810
http://dx.doi.org/10.1093/pnasnexus/pgad342
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