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EASTR: Identifying and eliminating systematic alignment errors in multi-exon genes

Accurate alignment of transcribed RNA to reference genomes is a critical step in the analysis of gene expression, which in turn has broad applications in biomedical research and in the basic sciences. We reveal that widely used splice-aware aligners, such as STAR and HISAT2, can introduce erroneous...

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Detalles Bibliográficos
Autores principales: Shinder, Ida, Hu, Richard, Ji, Hyun Joo, Chao, Kuan-Hao, Pertea, Mihaela
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10632439/
https://www.ncbi.nlm.nih.gov/pubmed/37940654
http://dx.doi.org/10.1038/s41467-023-43017-4