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Novel RICTOR amplification harbouring entities: FISH validation of RICTOR amplification in tumour tissue after next-generation sequencing

Alterations in mTOR signalling molecules, including RICTOR amplification, have been previously described in many cancers, particularly associated with poor prognosis. In this study, RICTOR copy number variation (CNV) results of diagnostic next-generation sequencing (NGS) were analysed in 420 various...

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Autores principales: Sztankovics, Dániel, Krencz, Ildikó, Moldvai, Dorottya, Dankó, Titanilla, Nagy, Ákos, Nagy, Noémi, Bedics, Gábor, Rókusz, András, Papp, Gergő, Tőkés, Anna-Mária, Pápay, Judit, Sápi, Zoltán, Dezső, Katalin, Bödör, Csaba, Sebestyén, Anna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10638425/
https://www.ncbi.nlm.nih.gov/pubmed/37949943
http://dx.doi.org/10.1038/s41598-023-46927-x
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author Sztankovics, Dániel
Krencz, Ildikó
Moldvai, Dorottya
Dankó, Titanilla
Nagy, Ákos
Nagy, Noémi
Bedics, Gábor
Rókusz, András
Papp, Gergő
Tőkés, Anna-Mária
Pápay, Judit
Sápi, Zoltán
Dezső, Katalin
Bödör, Csaba
Sebestyén, Anna
author_facet Sztankovics, Dániel
Krencz, Ildikó
Moldvai, Dorottya
Dankó, Titanilla
Nagy, Ákos
Nagy, Noémi
Bedics, Gábor
Rókusz, András
Papp, Gergő
Tőkés, Anna-Mária
Pápay, Judit
Sápi, Zoltán
Dezső, Katalin
Bödör, Csaba
Sebestyén, Anna
author_sort Sztankovics, Dániel
collection PubMed
description Alterations in mTOR signalling molecules, including RICTOR amplification, have been previously described in many cancers, particularly associated with poor prognosis. In this study, RICTOR copy number variation (CNV) results of diagnostic next-generation sequencing (NGS) were analysed in 420 various human malignant tissues. RICTOR amplification was tested by Droplet Digital PCR (ddPCR) and validated using the “gold standard” fluorescence in situ hybridisation (FISH). Additionally, the consequences of Rictor protein expression were also studied by immunohistochemistry. RICTOR amplification was presumed in 37 cases with CNV ≥ 3 by NGS, among these, 16 cases (16/420; 3.8%) could be validated by FISH, however, ddPCR confirmed only 11 RICTOR-amplified cases with lower sensitivity. Based on these, neither NGS nor ddPCR could replace traditional FISH in proof of RICTOR amplification. However, NGS could be beneficial to highlight potential RICTOR-amplified cases. The obtained results of the 14 different tumour types with FISH-validated RICTOR amplification demonstrate the importance of RICTOR amplification in a broad spectrum of tumours. The newly described RICTOR-amplified entities could initiate further collaborative studies with larger cohorts to analyse the prevalence of RICTOR amplification in rare diseases. Finally, our and further work could help to improve and expand future therapeutic opportunities for mTOR-targeted therapies.
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spelling pubmed-106384252023-11-11 Novel RICTOR amplification harbouring entities: FISH validation of RICTOR amplification in tumour tissue after next-generation sequencing Sztankovics, Dániel Krencz, Ildikó Moldvai, Dorottya Dankó, Titanilla Nagy, Ákos Nagy, Noémi Bedics, Gábor Rókusz, András Papp, Gergő Tőkés, Anna-Mária Pápay, Judit Sápi, Zoltán Dezső, Katalin Bödör, Csaba Sebestyén, Anna Sci Rep Article Alterations in mTOR signalling molecules, including RICTOR amplification, have been previously described in many cancers, particularly associated with poor prognosis. In this study, RICTOR copy number variation (CNV) results of diagnostic next-generation sequencing (NGS) were analysed in 420 various human malignant tissues. RICTOR amplification was tested by Droplet Digital PCR (ddPCR) and validated using the “gold standard” fluorescence in situ hybridisation (FISH). Additionally, the consequences of Rictor protein expression were also studied by immunohistochemistry. RICTOR amplification was presumed in 37 cases with CNV ≥ 3 by NGS, among these, 16 cases (16/420; 3.8%) could be validated by FISH, however, ddPCR confirmed only 11 RICTOR-amplified cases with lower sensitivity. Based on these, neither NGS nor ddPCR could replace traditional FISH in proof of RICTOR amplification. However, NGS could be beneficial to highlight potential RICTOR-amplified cases. The obtained results of the 14 different tumour types with FISH-validated RICTOR amplification demonstrate the importance of RICTOR amplification in a broad spectrum of tumours. The newly described RICTOR-amplified entities could initiate further collaborative studies with larger cohorts to analyse the prevalence of RICTOR amplification in rare diseases. Finally, our and further work could help to improve and expand future therapeutic opportunities for mTOR-targeted therapies. Nature Publishing Group UK 2023-11-10 /pmc/articles/PMC10638425/ /pubmed/37949943 http://dx.doi.org/10.1038/s41598-023-46927-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Sztankovics, Dániel
Krencz, Ildikó
Moldvai, Dorottya
Dankó, Titanilla
Nagy, Ákos
Nagy, Noémi
Bedics, Gábor
Rókusz, András
Papp, Gergő
Tőkés, Anna-Mária
Pápay, Judit
Sápi, Zoltán
Dezső, Katalin
Bödör, Csaba
Sebestyén, Anna
Novel RICTOR amplification harbouring entities: FISH validation of RICTOR amplification in tumour tissue after next-generation sequencing
title Novel RICTOR amplification harbouring entities: FISH validation of RICTOR amplification in tumour tissue after next-generation sequencing
title_full Novel RICTOR amplification harbouring entities: FISH validation of RICTOR amplification in tumour tissue after next-generation sequencing
title_fullStr Novel RICTOR amplification harbouring entities: FISH validation of RICTOR amplification in tumour tissue after next-generation sequencing
title_full_unstemmed Novel RICTOR amplification harbouring entities: FISH validation of RICTOR amplification in tumour tissue after next-generation sequencing
title_short Novel RICTOR amplification harbouring entities: FISH validation of RICTOR amplification in tumour tissue after next-generation sequencing
title_sort novel rictor amplification harbouring entities: fish validation of rictor amplification in tumour tissue after next-generation sequencing
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10638425/
https://www.ncbi.nlm.nih.gov/pubmed/37949943
http://dx.doi.org/10.1038/s41598-023-46927-x
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