STAMarker: determining spatial domain-specific variable genes with saliency maps in deep learning

Spatial transcriptomics characterizes gene expression profiles while retaining the information of the spatial context, providing an unprecedented opportunity to understand cellular systems. One of the essential tasks in such data analysis is to determine spatially variable genes (SVGs), which demons...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Chihao, Dong, Kangning, Aihara, Kazuyuki, Chen, Luonan, Zhang, Shihua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Methods
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10639070/
https://www.ncbi.nlm.nih.gov/pubmed/37811885
http://dx.doi.org/10.1093/nar/gkad801

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10639070/
https://www.ncbi.nlm.nih.gov/pubmed/37811885
http://dx.doi.org/10.1093/nar/gkad801

Ejemplares similares