Efficient end-to-end long-read sequence mapping using minimap2-fpga integrated with hardware accelerated chaining

minimap2 is the gold-standard software for reference-based sequence mapping in third-generation long-read sequencing. While minimap2 is relatively fast, further speedup is desirable, especially when processing a multitude of large datasets. In this work, we present minimap2-fpga, a hardware-accelera...

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Detalles Bibliográficos
Autores principales: Liyanage, Kisaru, Samarakoon, Hiruna, Parameswaran, Sri, Gamaarachchi, Hasindu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10656460/
https://www.ncbi.nlm.nih.gov/pubmed/37978244
http://dx.doi.org/10.1038/s41598-023-47354-8

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10656460/
https://www.ncbi.nlm.nih.gov/pubmed/37978244
http://dx.doi.org/10.1038/s41598-023-47354-8

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