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Software pipelines for RNA-Seq, ChIP-Seq and germline variant calling analyses in common workflow language (CWL)

Background: Automating data analysis pipelines is a key requirement to ensure reproducibility of results, especially when dealing with large volumes of data. Here we assembled automated pipelines for the analysis of High-throughput Sequencing (HTS) data originating from RNA-Seq, ChIP-Seq and Germlin...

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Detalles Bibliográficos
Autores principales: Kyritsis, Konstantinos A., Pechlivanis, Nikolaos, Psomopoulos, Fotis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10662043/
https://www.ncbi.nlm.nih.gov/pubmed/38025398
http://dx.doi.org/10.3389/fbinf.2023.1275593