RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures

SUMMARY: We propose RabbitKSSD, a high-speed genome distance estimation tool. Specifically, we leverage load-balanced task partitioning, fast I/O, efficient intermediate result accesses, and high-performance data structures to improve overall efficiency. Our performance evaluation demonstrates that...

Descripción completa

Detalles Bibliográficos
Autores principales: Xu, Xiaoming, Yin, Zekun, Yan, Lifeng, Yi, Huiguang, Wang, Hua, Schmidt, Bertil, Liu, Weiguo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10681859/
https://www.ncbi.nlm.nih.gov/pubmed/37971961
http://dx.doi.org/10.1093/bioinformatics/btad695

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10681859/
https://www.ncbi.nlm.nih.gov/pubmed/37971961
http://dx.doi.org/10.1093/bioinformatics/btad695

Ejemplares similares