scPipe: an extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor

scPipe is a flexible R/Bioconductor package originally developed to analyse platform-independent single-cell RNA-Seq data. To expand its preprocessing capability to accommodate new single-cell technologies, we further developed scPipe to handle single-cell ATAC-Seq and multi-modal (RNA-Seq and ATAC-...

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Detalles Bibliográficos
Autores principales: Amarasinghe, Shanika L, Yang, Phil, Voogd, Oliver, Yang, Haoyu, Du, Mei R M, Su, Shian, Brown, Daniel V, Jabbari, Jafar S, Bowden, Rory, Ritchie, Matthew E
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Application Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10689045/
https://www.ncbi.nlm.nih.gov/pubmed/38046273
http://dx.doi.org/10.1093/nargab/lqad105

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10689045/
https://www.ncbi.nlm.nih.gov/pubmed/38046273
http://dx.doi.org/10.1093/nargab/lqad105

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